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Schema
Citing CMDGA
Clear Filters
Annotation type
36
accessible chromatin
33
chromatin state
26
candidate regulatory elements
21
binding sites
15
differential activity
15
variant allelic effects
9
Fine-mapped variants
8
histone modifications
7
target gene predictions
6
eQTL
4
gene expression
3
caQTL
Annotation Category
7
Target gene links
Annotation type Category
4
ATAC-seq
3
DNase-seq
3
H3K27ac ChIP-Seq
2
HiC
1
pCHi-C
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
4
primary cell
3
tissue
Biosample term
2
aorta
2
endothelial cell of umbilical vein
1
coronary artery
1
endothelial cell of lymphatic vessel
1
smooth muscle cell of the coronary artery
Organ
74
epithelium
57
embryo
uterus
38
connective tissue
32
blood
32
bodily fluid
31
pancreas
18
intestine
16
brain
13
heart
12
musculature of body
11
large intestine
10
pituitary gland
10
skin of body
8
lung
7
adrenal gland
7
liver
7
stomach
7
vasculature
6
blood vessel
5
adipose tissue
5
mammary gland
4
small intestine
3
esophagus
3
extraembryonic component
3
gonad
3
limb
3
ovary
3
thymus
2
artery
2
bone element
2
bone marrow
2
prostate gland
2
spleen
2
thyroid gland
2
vein
1
breast
1
bronchus
1
lymph node
1
lymphatic vessel
1
lymphoid tissue
1
penis
1
placenta
1
spinal cord
1
urinary bladder
Life stage
1
adult
Date released
3
March, 2020
3
May, 2021
1
November, 2021
Software used
r
4
abc
2
hiccups
1
nospecificsoft_customcode
Lab
3
AMP-T2D consortium
3
Jesse Engreitz, Stanford University
1
Bing Ren, UCSD
Project
6
AMP
1
ENCODE
RFA
6
AMP
1
ENCODE3
organ_slims!
uterus
software_used.software.name!
r
Showing 7 of 7 results
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Download
FileSet
DSR451QZS
released
Annotation file set
: Target gene predictions of Lymphatic Endothelial Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR784TGC
released
Annotation file set
: enhancer-gene predicton of endothelial_cell_of_umbilical_vein-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886XYE
released
Annotation file set
: enhancer-gene predicton of coronary_artery_smooth_muscle_cell-Miller2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR233ZIX
released
Annotation file set
: enhancer-gene predicton of coronary_artery-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR049KAF
released
Annotation file set
: A target gene prediction annotation in endothelial cell of umbilical vein of DSR430XOJ Hi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR428FCH
released
Annotation file set
: A target gene prediction annotation in aorta of DSR073ZJB Hi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR452SBJ
released
Annotation file set
: A target gene prediction annotation in Human Aorta of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP