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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
1
candidate regulatory elements
1
chromatin state
Annotation Category
5
cis-regulatory elements
Target gene links
Annotation type Category
3
snATAC-seq
2
ChIP-seq
1
DNase-seq
Available data
4
bed bed3+
3
bigWig
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
4
GRCh38
Organism
5
Homo sapiens
Biosample type
3
primary cell
2
cell line
Biosample term
128
monocyte
70
heart
67
kidney
65
stomach
57
brain
51
lung
51
muscle of arm
46
CD8-positive, alpha-beta T cell
46
neural progenitor cell
46
small intestine
45
adrenal gland
45
placenta
44
islet of Langerhans
44
muscle of leg
43
A549
42
large intestine
41
muscle of back
40
common myeloid progenitor, CD34-positive
39
left lung
39
liver
37
retina
34
B cell
34
endothelial cell
34
right lung
34
thymus
33
hematopoietic multipotent progenitor cell
33
hepatocyte
32
right kidney
31
renal cortex interstitium
31
renal pelvis
28
macrophage
27
fibroblast
27
heart left ventricle
27
left kidney
27
spinal cord
25
spleen
24
regulatory T cell
23
CD4-positive, alpha-beta memory T cell
23
adipose tissue
22
EndoC_BH1
22
epithelial cell of proximal tubule
22
pancreatic ductal cell
22
tibial nerve
21
subcutaneous adipose tissue
20
adipocyte
20
breast cancer cell
20
glomerular endothelial cell
20
pigmented layer of retina
19
MCF-7
19
T-helper 1 cell
19
body of pancreas
19
caudate nucleus
18
K562
18
T cell
18
T-helper 17 cell
18
foreskin keratinocyte
17
coronary artery
17
embryonic stem cell
17
natural killer cell
17
right atrium auricular region
17
smooth muscle cell
16
endothelial cell of hepatic sinusoid
16
foreskin fibroblast
16
keratinocyte
16
pancreas
16
sigmoid colon
16
substantia nigra
16
tibial artery
15
CD8-positive, alpha-beta memory T cell
15
cardiac muscle cell
15
endothelial cell of umbilical vein
15
induced pluripotent stem cell
15
omental fat pad
15
osteoblast
15
pancreatic beta cell
15
retinal pigment epithelial cell
15
trophoblast cell
14
H1-hESC
14
frontal cortex
14
heart right ventricle
14
mesenchymal stem cell
14
pancreatic acinar cell
14
skeletal muscle myoblast
14
testis
13
HepG2
13
T-helper 2 cell
13
cerebellum
13
excitatory neuron
13
gastrocnemius medialis
13
mononuclear cell
13
ovary
13
pancreatic alpha cell
13
putamen
13
skeletal muscle tissue
13
thyroid gland
13
upper lobe of left lung
12
CD14-positive monocyte
12
CD4-positive, alpha-beta T cell
12
ascending aorta
12
astrocyte
12
layer of hippocampus
12
lymphoblastoid cell line
12
neuroblastoma cell
12
pericyte cell
12
psoas muscle
12
temporal lobe
12
transverse colon
11
bronchial epithelial cell
11
fibroblast of cardiac tissue
11
fibroblast of lung
11
mammary epithelial cell
11
mammary gland epithelial cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
neutrophil
11
prostate gland
11
skeletal muscle satellite cell
10
Ammon's horn
10
Rhabdomyosarcoma
10
chorionic villus
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
left cardiac atrium
10
muscle of trunk
10
pancreatic delta cell
10
progenitor cell of endocrine pancreas
9
Peyer's patch
9
cardiomyocytes
9
choroid plexus epithelial cell
9
diffuse intrinsic pontine glioma
9
endocrine pancreas
9
esophagus muscularis mucosa
9
hepatic stellate cell
9
left renal cortex interstitium
9
left renal pelvis
9
liposarcoma
9
neuronal stem cell
9
neurosphere
8
22Rv1
8
SK-N-DZ
8
aorta
8
esophagus squamous epithelium
8
fibroblast of dermis
8
kidney tubule cell
8
pancreatic stellate cell
8
right renal pelvis
8
skeletal muscle fiber
7
B-lymphoblastoid cell line
7
GM12865
7
GM12878
7
HeLa-S3
7
IMR-90
7
amygdala
7
breast epithelium
7
colonic mucosa
7
epithelial cell of prostate
7
erythroblast
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
fibroblast cell line
7
mature neutrophil
7
right lobe of liver
7
right renal cortex interstitium
7
thoracic aorta
7
tongue
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12864
6
H9
6
HEK293
6
SW480
6
angular gyrus
6
anterior cingulate cortex
6
chondrocyte
6
cingulate gyrus
6
dermis blood vessel endothelial cell
6
duodenal mucosa
6
endodermal cell
6
esophagus
6
fibroblast of villous mesenchyme
6
foreskin melanocyte
6
globus pallidus
6
hESC cell
6
hypothalamus
6
lower leg skin
6
mesodermal cell
6
midbrain
6
neuroblastoma cell line
6
nucleus accumbens
6
skin fibroblast
6
trophoblast
5
cardiac fibroblast
Organ
5
epithelium
5
intestine
5
large intestine
Life stage
2
unknown
Date released
3
November, 2021
2
September, 2022
Software used
3
macs
1
chromhmm
1
r
Lab
3
Bing Ren, UCSD
2
AMP-T2D consortium
Project
3
ENCODE
2
AMP
RFA
3
ENCODE3
2
AMP
organ_slims!
vagina
annotation_category!
Target gene links
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR635VAQ
released
Annotation file set
: Candidate regulatory elements for BSS00223 colon epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR024YCW
released
Annotation file set
: Chromatin states for BSS00223 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR609IPL
released
Annotation file set
: Accessible chromatin annotation of Colon Epithelial Cell 3 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR419PGV
released
Annotation file set
: Accessible chromatin annotation of Colon Epithelial Cell 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR903BJH
released
Annotation file set
: Accessible chromatin annotation of Colon Epithelial Cell 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE