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Citing CMDGA
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Annotation type
1
accessible chromatin
1
gene expression
1
target gene predictions
Annotation Category
1
Gene expression levels
1
Target gene links
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
RNA-seq
1
snATAC-seq
Available data
2
bed bed3+
1
bigWig
1
tsv
File set status
3
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
tissue
Biosample term
63
small intestine
56
large intestine
23
sigmoid colon
19
transverse colon
14
Peyer's patch
10
colonic mucosa
9
colon epithelial cell
9
duodenal mucosa
9
mucosa of rectum
8
HT-29
8
muscle layer of colon
8
muscle layer of duodenum
7
SW480
6
HCT116
6
enterocyte
4
HCT-116 cell
4
RKO
4
enteric smooth muscle cell
4
rectum smooth muscle tissue
2
enterocyte of epithelium of small intestine
2
paneth cell
2
small intestine goblet cell
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
intestinal epithelial cell
1
intestinal epithelium
1
rectal smooth muscle tissue
1
small intestine - terminal Ileum
Organ
3
intestine
2
epithelium
1
large intestine
Life stage
1
adult
Date released
2
November, 2021
1
March, 2024
Software used
1
abc
1
macs
1
r
Lab
2
Bing Ren, UCSD
1
AMP-T2D consortium
Project
2
ENCODE
1
AMP
RFA
2
ENCODE3
1
AMP
organ_slims!
vagina
Showing 3 of 3 results
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Download
FileSet
DSR757URC
released
Annotation file set
: Gene expression summary from GTEx V8 - Gene TPMs for Colon - Transverse.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR712FIM
released
Annotation file set
: Target gene predictions of Paneth Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR173UGN
released
Annotation file set
: Accessible chromatin annotation of Paneth Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE