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Schema
Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
131
monocyte
69
heart
67
stomach
65
kidney
61
HeLa-S3
55
brain
52
H1-hESC
52
lung
51
muscle of arm
50
CD8-positive, alpha-beta T cell
48
adrenal gland
48
small intestine
47
neural progenitor cell
46
placenta
44
A549
43
large intestine
43
muscle of leg
42
islet of Langerhans
41
common myeloid progenitor, CD34-positive
41
endothelial cell
41
muscle of back
40
liver
39
left lung
37
retina
37
thymus
36
B cell
35
hepatocyte
34
K562
34
right lung
33
hematopoietic multipotent progenitor cell
32
fibroblast
32
macrophage
32
right kidney
31
renal cortex interstitium
31
renal pelvis
28
spinal cord
28
spleen
27
CD14-positive monocyte
27
left kidney
26
heart left ventricle
25
adipose tissue
25
pancreatic ductal cell
25
regulatory T cell
24
smooth muscle cell
23
CD4-positive, alpha-beta memory T cell
23
EndoC_BH1
22
epithelial cell of proximal tubule
21
MCF-7
21
pericyte cell
21
tibial nerve
20
adipocyte
20
body of pancreas
20
breast cancer cell
20
glomerular endothelial cell
20
natural killer cell
20
pigmented layer of retina
20
subcutaneous adipose tissue
19
T-helper 1 cell
18
HFFc6
18
T cell
18
T-helper 17 cell
18
foreskin keratinocyte
18
pancreas
18
pancreatic beta cell
17
caudate nucleus
17
foreskin fibroblast
17
keratinocyte
17
ovary
17
pancreatic acinar cell
17
pancreatic alpha cell
17
right atrium auricular region
17
sigmoid colon
17
trophoblast cell
16
astrocyte
16
cardiac muscle cell
16
induced pluripotent stem cell
16
osteoblast
15
CD8-positive, alpha-beta memory T cell
15
HepG2
15
mesenchymal stem cell
15
omental fat pad
15
pancreatic delta cell
15
psoas muscle
15
retinal pigment epithelial cell
15
substantia nigra
15
transverse colon
14
GM12878
14
gastrocnemius medialis
14
mononuclear cell
14
testis
14
thyroid gland
13
H9
13
T-helper 2 cell
13
excitatory neuron
13
fibroblast of cardiac tissue
13
frontal cortex
13
heart right ventricle
13
neutrophil
13
putamen
13
skeletal muscle tissue
13
upper lobe of left lung
12
CD4-positive, alpha-beta T cell
12
cerebellum
12
embryonic stem cell
12
layer of hippocampus
12
lymphoblastoid cell line
12
muscle of trunk
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
prostate gland
12
skeletal muscle myoblast
11
Ammon's horn
11
chorionic villus
11
fibroblast of lung
11
mammary epithelial cell
11
mammary gland epithelial cell
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
endocrine pancreas
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
left renal cortex interstitium
10
neuronal stem cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal pelvis
10
skeletal muscle satellite cell
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
erythroblast
9
fibroblast of dermis
9
left renal pelvis
9
liposarcoma
9
lymphocyte
9
neurosphere
9
skin fibroblast
8
22Rv1
8
B-lymphoblastoid cell line
8
breast epithelium
8
esophagus
8
fibroblast cell line
8
hepatic stellate cell
8
pituitary stalk
8
skeletal muscle fiber
8
trophoblast
7
CD4-positive helper T cell
7
GM12865
7
HEK293
7
amygdala
7
cardiomyocytes (cardiac muscle cell)
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
kidney tubule cell
7
lower leg skin
7
memory B cell
7
mesendoderm
7
temporal lobe
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
HAP-1
6
HT-29
6
HUES8
6
IMR-90
6
Jurkat
6
LNCAP
6
NAMALWA cell
6
SK-N-MC
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
colon epithelial cell
6
endometrium adenocarcinoma
6
eye
6
globus pallidus
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
nucleus accumbens
6
occipital lobe
6
parathyroid adenoma
6
plasma cell
6
renal cortical epithelial cell
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
organ_slims!
vasculature
annotation_type!
chromatin state
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP