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Schema
Citing CMDGA
Clear Filters
Annotation type
21
chromatin state
3
gene expression
1
accessible chromatin
1
binding sites
1
histone modifications
1
target gene predictions
Annotation Category
3
Gene expression levels
1
cis-regulatory elements
Annotation type Category
DNase-seq
2
RNA-seq
1
ATAC-seq
1
scRNA-seq
Available data
3
tsv
1
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
31
monocyte
26
endothelial cell
22
retina
20
pigmented layer of retina
19
hepatocyte
17
islet of Langerhans
17
neural progenitor cell
16
EndoC_BH1
16
epithelial cell of proximal tubule
16
fibroblast
14
excitatory neuron
14
glomerular endothelial cell
14
kidney
14
macrophage
13
pancreatic ductal cell
11
cardiomyocytes
11
pancreatic beta cell
11
smooth muscle cell
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pericyte cell
10
regulatory T cell
9
T-helper 1 cell
9
T-helper 17 cell
9
astrocyte
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
progenitor cell of endocrine pancreas
8
B cell
8
H1-hESC
8
pancreatic delta cell
7
CD8-positive, alpha-beta T cell
7
adipocyte
7
embryonic stem cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
memory B cell
7
mesangial cell
7
retinal pigment epithelial cell
7
skeletal muscle fiber
7
skeletal muscle satellite cell
7
subcutaneous adipose tissue
6
T cell
6
gamma-delta T cell
6
glomerular visceral epithelial cell
6
glutamatergic neuron
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
pancreatic stellate cell
5
SGBS preadipocytes
5
T-helper 2 cell
5
adipose tissue
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
erythroblast
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
natural killer cell
4
T follicular helper cell
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
heart
4
kidney connecting tubule epithelial cell
4
leukocyte
4
liver
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
naive B cell
4
nephron progenitor
4
osteoblast
4
pancreatic polypeptide-secreting cell
4
type I muscle cell
4
type II muscle cell
4
type II pneumocyte
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
T Cell
3
Transitional Principal-Intercalated Cell
3
adult endothelial progenitor cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
enterocyte
3
gabaergic neuron
3
glial cell
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
mesenchymal stem cell
3
naive regulatory T cell
3
omental fat pad
3
plasma cell
3
right atrium auricular region
3
tibial nerve
3
type I pneumocyte
2
Kupffer cell
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Schwann cell
2
adipose-derived stem cell
2
basal cell
2
blood vessel smooth muscle cell
2
body of pancreas
2
cerebellum
2
cholangiocyte
2
ciliated cell
2
club cell
2
differentiating adipose-derived stem cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
frontal cortex
2
heart left ventricle
2
hepatic stellate cell
2
hippocampal neuron
2
keratinocyte
2
kidney glomerular epithelial cell
2
kidney inner medulla collecting duct intercalated cell
2
lower motor neuron
2
luminal epithelial cell of mammary gland
2
mast cell
2
megakaryocyte
2
mesothelial cell
2
metanephros
2
myeloid dendritic cell
2
naive B cel
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
neural cell
2
neuron
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
plasmacytoid dendritic cell
2
renal principal cell
2
renal vesicle
2
schwann cell
2
smooth muscle cell of the esophagus
2
spleen
2
ureteric bud
2
visceral abdominal adipose tissue
1
Ammon's horn
1
B-1 B cell
Organ
4
heart
Life stage
2
embryonic
1
adult
1
fetal
Date released
1
August, 2021
1
February, 2020
1
February, 2021
1
November, 2019
Software used
3
r
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
organ_slims!
vasculature
annotation_type_category!
DNase-seq
Showing 4 of 4 results
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Download
FileSet
DSR321UPS
released
Annotation file set
: Gene expression annotation of heart left ventricle from single-cell transcriptome analysis map the developmental track of the human heart
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR384FIT
released
Annotation file set
: Gene expression of heart (atria and ventricle)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR670YAY
released
Annotation file set
: Gene expression levels of Heart fetal from RNA-seq (GSE63634) + RNA-seq (ENCODE) + RNA-seq (GSE106690)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR351NUN
released
Annotation file set
: Accessible chromatin annotation of heart
Lab:
AMP-T2D consortium
Project:
AMP