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Annotation type
1
variant allelic effects
Annotation Category
1
Genetic variant effects
Annotation type Category
1
snATAC-seq
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
130
monocyte
54
common myeloid progenitor, CD34-positive
48
CD8-positive, alpha-beta T cell
37
B cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
hepatocyte
28
regulatory T cell
23
T-helper 1 cell
23
endothelial cell
23
epithelial cell of proximal tubule
22
CD8-positive, alpha-beta memory T cell
21
T-helper 17 cell
21
glomerular endothelial cell
21
natural killer cell
20
mononuclear cell
19
foreskin keratinocyte
18
T cell
18
macrophage
18
trophoblast cell
17
T-helper 2 cell
17
osteoblast
16
fibroblast of lung
16
foreskin fibroblast
16
pancreatic beta cell
16
pancreatic ductal cell
16
skeletal muscle myoblast
15
neutrophil
15
pancreatic alpha cell
14
naive thymus-derived CD4-positive, alpha-beta T cell
14
pancreatic delta cell
13
CD4-positive, alpha-beta T cell
13
keratinocyte
13
mammary epithelial cell
13
neurosphere
12
bronchial epithelial cell
12
fibroblast of dermis
12
pancreatic acinar cell
11
fibroblast
11
glomerular visceral epithelial cell
11
mammary gland epithelial cell
10
kidney tubule cell
9
epithelial cell of prostate
9
fibroblast of cardiac tissue
9
mature neutrophil
9
naive T cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
retinal pigment epithelial cell
9
skeletal muscle satellite cell
8
astrocyte
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of villous mesenchyme
8
hepatic stellate cell
8
kidney glomerular epithelial cell
8
myoepithelial cell of mammary gland
8
pancreatic stellate cell
8
renal cortical epithelial cell
8
smooth muscle cell
7
CD1c-positive myeloid dendritic cell
7
cardiac muscle cell
7
kidney epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
memory B cell
7
mesenchymal stem cell
7
skin fibroblast
6
T-cell
6
alternatively activated macrophage
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
epithelial cell of esophagus
6
erythroblast
6
foreskin melanocyte
6
gamma-delta T cell
6
naive B cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
peripheral blood mononuclear cell
6
skeletal muscle cell
6
skeletal muscle fiber
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of peridontal ligament
5
inflammatory macrophage
5
iris pigment epithelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mesangial cell
5
myofibroblast cell
5
non-pigmented ciliary epithelial cell
5
tracheal epithelial cell
5
type I muscle cell
5
type II muscle cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
astrocyte of the spinal cord
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
glutamatergic neuron
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mast cell
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pericyte cell
4
plasma cell
4
preadipocyte
4
renal epithelial cell
4
stromal cell of bone marrow
3
Cycling Mononuclear Phagocyte
3
Ishikawa
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
Th1 cell
3
Th17 cell
3
activated CD8-positive, alpha-beta T cell
3
adipocyte
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
basal cell
3
blood cell
3
bone marrow cell
3
brain pericyte
3
cardiac fibroblast
3
enterocyte
3
epidermal melanocyte
3
epithelial cell of amnion
3
erythroid cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
Organ
1
epithelium
Date released
1
February, 2024
Software used
1
deltasvm
Lab
1
Bing Ren, UCSD
Project
1
AMP
RFA
ENCODE3
1
AMP
organ_slims!
vasculature
award.rfa!
ENCODE3
Showing 1 of 1 results
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Download
FileSet
DSR198EFG
released
Annotation file set
: Variant allelic effects annotation of Mesothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP