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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
60
placenta
40
retina
32
adipose tissue
23
trophoblast cell
21
subcutaneous adipose tissue
20
pigmented layer of retina
18
omental fat pad
16
chorionic villus
16
retinal pigment epithelial cell
10
chorion membrane
9
eye
8
WERI-Rb-1
8
fibroblast of villous mesenchyme
6
subcutaneous abdominal adipose tissue
6
umbilical cord
5
fibroblast of the conjunctiva
5
iris pigment epithelial cell
4
amnion
4
visceral abdominal adipose tissue
3
HTR-8/Svneo
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
epithelial cell of amnion
2
Muller cell
2
adipose tissue derived mesenchymal stem cell
2
chorion
1
omental fat pad
1
retinal pigment epithelial cell
1
adipose-derived mesenchymal stem cell
1
amniotic epithelial cell
1
beige adipocyte
1
corneal epithelium
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
mesenchymal stem cell of adipose
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
retinal bipolar neuron
1
retinal cell
1
trophoblast giant cell
1
white adipose cell
1
white adipose tissue
Organ
5
epithelium
5
eye
0
adipose tissue
0
extraembryonic component
Life stage
4
unknown
Date released
3
September, 2022
1
February, 2021
1
June, 2020
Software used
2
r
1
chromhmm
1
encode-ccres
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR741HXN
released
Annotation file set
: Candidate regulatory elements for BSS00743 iris pigment epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR523WGB
released
Annotation file set
: Target gene predictions for BSS00743 iris pigment epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR302XLF
released
Annotation file set
: Chromatin states for BSS00743 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR858CLJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE iris pigment epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR950BXJ
released
Annotation file set
: Accessible chromatin annotation for Others HIPEpiC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP