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Schema
Citing CMDGA
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Annotation type
11
candidate regulatory elements
8
chromatin state
7
target gene predictions
3
accessible chromatin
2
variant allelic effects
1
eQTL
1
gene expression
1
histone modifications
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
DNase-seq
1
ATAC-seq
Available data
3
bed bed3+
3
bigWig
File set status
3
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
5
heart
4
fibroblast of cardiac tissue
3
coronary artery
3
heart left ventricle
3
right atrium auricular region
2
endocardial cell
1
CMK
1
GM06990
1
GM12878
1
GM19240
1
HAP-1
1
HL-60
1
K562
1
KBM-7
1
NAMALWA cell
1
OCI-LY7
1
RPMI8226
cardiac endothelial cell
1
fetal heart
1
heart right ventricle
1
left cardiac atrium
1
peripheral blood stem cell
1
smooth muscle cell of the coronary artery
1
ventricular cardiac muscle cell
Organ
3
heart
0
blood
Life stage
2
adult
1
fetal
Date released
2
January, 2020
1
October, 2019
Software used
3
macs
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
cardiac endothelial cell
Showing 3 of 3 results
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FileSet
DSR193GSB
released
Annotation file set
: Accessible chromatin annotation of heart left ventricle fetal from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR231CTC
released
Annotation file set
: Accessible chromatin annotation of heart left ventricle adult from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR571URP
released
Annotation file set
: Heart left ventricle accessible chromatin annotation of overlapping ATAC-seq sites from 2 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP