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Citing CMDGA
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Annotation type
8
target gene predictions
2
binding sites
2
candidate regulatory elements
2
chromatin state
1
accessible chromatin
1
histone modifications
Annotation Category
8
Target gene links
Annotation type Category
6
HiC
2
DNase-seq
1
ATAC-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
6
GRCh38
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
23
K562
16
brain
16
muscle of arm
14
muscle of leg
10
pituitary stalk
8
GM12878
5
gastrocnemius medialis
3
SK-N-SH
3
caudate nucleus
3
layer of hippocampus
3
tibial nerve
2
Ammon's horn
2
Brodmann (1909) area 46
2
GM19238
2
GM19239
2
GM19240
2
HAP-1
2
NAMALWA cell
2
OCI-LY7
2
SK-N-DZ
2
angular gyrus
2
cerebellum
2
cingulate gyrus
2
frontal cortex
2
limb
2
lower leg skin
2
substantia nigra
2
temporal lobe
2
tibial artery
1
A172
1
BE(2)-C
1
CMK
1
Daoy
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
GM06990
1
GM12875
1
GM12891
1
GM12892
1
GM18505
1
GM19099
1
GM19193
1
GM23248
1
H54
1
HL-60
1
KBM-7
1
M059J
1
NB4
1
RPMI8226
1
SK-N-MC
1
arm bone
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
cerebellar cortex
1
choroid plexus epithelial cell
1
dorsolateral prefrontal cortex
1
femur
1
fibroblast of arm
1
globus pallidus
1
inferior parietal cortex
1
leg bone
1
medulla oblongata
1
medulloblastoma
1
midbrain
1
middle frontal gyrus
1
pons
1
putamen
1
undifferentiated ESC (H9 cell line)
Organ
8
blood
8
bodily fluid
0
brain
0
limb
Life stage
1
adult
Date released
6
February, 2024
1
May, 2021
1
September, 2022
Software used
1
abc
1
r
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
Showing 8 of 8 results
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Download
FileSet
DSR413SNG
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in situ crosslinking, with SDS treatment, without restriction digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR828CUR
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in situ crosslinking, without SDS treatment, without restriction digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR519UOA
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in vitro crosslinking, with SDS, NcoI digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR974VNF
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in vitro crosslinking, with SDS, without restriction digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR815MBX
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in vitro crosslinking, with SDS, with RNase A digestion, without HindIII digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR193AOO
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in vitro crosslinking, with SDS, HindIII digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR835PAE
released
Annotation file set
: Target gene predictions for BSS00439 GM12878 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR117MIS
released
Annotation file set
: enhancer-gene predicton of GM12878-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP