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Citing CMDGA
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Annotation type
2
gene expression
1
caQTL
1
target gene predictions
Annotation Category
2
Gene expression levels
1
Genetic variant effects
1
Target gene links
Annotation type Category
2
RNA-seq
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
snATAC-seq
Available data
2
bed bed3+
1
tsv
File set status
4
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
cell line
Biosample term
18
coronary artery
18
endothelial cell of umbilical vein
16
tibial artery
15
ascending aorta
13
aorta
10
dermis blood vessel endothelial cell
10
thoracic aorta
5
Afferent / Efferent Arteriole Endothelial Cell
5
Degenerative Peritubular Capillary Endothelial Cell
5
Glomerular Capillary Endothelial Cell
5
Peritubular Capillary Endothelial Cell
5
fibroblast of pulmonary artery
5
fibroblast of the aortic adventitia
4
brain microvascular endothelial cell
4
endothelial cell of hepatic sinusoid
4
kidney capillary endothelial cell
4
pancreatic endothelial cell
4
pulmonary artery endothelial cell
4
smooth muscle cell of the coronary artery
2
capillary endothelial cell
1
brain microvascular endothelial cell
1
abdominal aorta artery
1
aorta wall
1
endothelial cell of coronary artery
1
whole blood
Organ
4
artery
4
blood vessel
4
heart
4
vasculature
Life stage
2
adult
Date released
1
February, 2020
1
February, 2021
1
February, 2023
1
May, 2021
Software used
macs
2
r
1
abc
1
rasqual
Lab
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
software_used.software.name!
macs
Showing 4 of 4 results
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FileSet
DSR702NJX
released
Annotation file set
: Chromatin accessibility QTLs in smooth muscle cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR938TKW
released
Annotation file set
: Gene expression annotation of smooth muscle cell of the coronary artery for GSE113348
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR886XYE
released
Annotation file set
: enhancer-gene predicton of coronary_artery_smooth_muscle_cell-Miller2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR277QFW
released
Annotation file set
: Gene expression levels of Coronary artery smooth muscle cell from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP