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Citing CMDGA
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Annotation type
2
candidate regulatory elements
1
caQTL
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
1
snATAC-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
21
coronary artery
19
tibial artery
16
ascending aorta
13
aorta
11
thoracic aorta
8
fibroblast of pulmonary artery
7
smooth muscle cell of the coronary artery
5
fibroblast of the aortic adventitia
1
abdominal aorta artery
1
aorta wall
1
aortic smooth muscle cell
1
circle of Willis
1
whole blood
Organ
5
blood vessel
5
connective tissue
5
vasculature
Life stage
4
unknown
Date released
3
September, 2022
1
February, 2021
1
February, 2023
Software used
2
r
1
chromhmm
1
encode-ccres
1
rasqual
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
organ_slims!
epithelium
eye
Showing 5 of 5 results
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Download
FileSet
DSR077AGV
released
Annotation file set
: Chromatin accessibility QTLs in fibroblasts passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR902WKL
released
Annotation file set
: Candidate regulatory elements for BSS00347 fibroblast of the aortic adventitia from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR987AUB
released
Annotation file set
: Target gene predictions for BSS00347 fibroblast of the aortic adventitia from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR159VQB
released
Annotation file set
: Chromatin states for BSS00347 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR761GFE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE fibroblast of the aortic adventitia
Lab:
AMP-T2D consortium
Project:
AMP