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Schema
Citing CMDGA
Clear Filters
Annotation type
2
gene expression
1
accessible chromatin
1
binding sites
1
caQTL
1
histone modifications
1
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Gene expression levels
1
Genetic variant effects
1
Target gene links
Annotation type Category
2
ATAC-seq
2
ChIP-seq
2
RNA-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
snATAC-seq
Available data
5
bed bed3+
1
bigWig
1
tsv
File set status
7
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
4
cell line
3
primary cell
Biosample term
60
placenta
23
trophoblast cell
21
coronary artery
21
ovary
20
endothelial cell of umbilical vein
19
tibial artery
18
testis
16
ascending aorta
16
chorionic villus
16
endothelial cell of hepatic sinusoid
13
aorta
11
thoracic aorta
10
chorion membrane
10
dermis blood vessel endothelial cell
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
7
pulmonary artery endothelial cell
7
smooth muscle cell of the coronary artery
6
NT2-D1 cell
6
umbilical cord
5
Afferent / Efferent Arteriole Endothelial Cell
5
Degenerative Peritubular Capillary Endothelial Cell
5
Glomerular Capillary Endothelial Cell
5
Peritubular Capillary Endothelial Cell
5
brain microvascular endothelial cell
5
fibroblast of the aortic adventitia
5
kidney capillary endothelial cell
4
amnion
4
aortic endothelial cell
4
pancreatic endothelial cell
3
HTR-8/Svneo
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
epithelial cell of amnion
2
capillary endothelial cell
2
chorion
2
endothelial cell of coronary artery
2
luteal cell
2
vein endothelial cell
1
brain microvascular endothelial cell
1
Leydig cell
1
NT2/D1
1
abdominal aorta artery
1
amniotic epithelial cell
1
aorta wall
1
aortic smooth muscle cell
1
circle of Willis
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
somatic gonadal cell
1
trophoblast giant cell
1
whole blood
Organ
7
artery
7
blood vessel
7
heart
7
vasculature
0
extraembryonic component
0
gonad
Life stage
2
adult
1
unknown
Date released
4
February, 2021
1
February, 2020
1
February, 2023
1
May, 2021
Software used
3
macs
2
r
1
abc
1
rasqual
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
Showing 7 of 7 results
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Download
FileSet
DSR702NJX
released
Annotation file set
: Chromatin accessibility QTLs in smooth muscle cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR442EVO
released
Annotation file set
: Accessible chromatin of smooth muscle cell of the coronary artery from GSE113348 ATAC-seq cell lines
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR938TKW
released
Annotation file set
: Gene expression annotation of smooth muscle cell of the coronary artery for GSE113348
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR951OND
released
Annotation file set
: Histone modifications annotation for Cardiovascular HCASMC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR898IID
released
Annotation file set
: Binding sites annotation for Cardiovascular HCASMC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR886XYE
released
Annotation file set
: enhancer-gene predicton of coronary_artery_smooth_muscle_cell-Miller2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR277QFW
released
Annotation file set
: Gene expression levels of Coronary artery smooth muscle cell from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP