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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
7
cell line
Biosample term
40
K562
15
GM12878
7
GM06990
7
GM12875
7
GM19238
7
GM19239
7
GM19240
7
HAP-1
7
HL-60
7
NAMALWA cell
7
OCI-LY7
6
CMK
6
GM12891
6
GM12892
6
RPMI8226
6
peripheral blood mononuclear cell
5
KBM-7
5
NB4
4
DOHH2
4
GM12873
4
GM18505
4
GM19099
4
GM19193
4
SU-DHL-6
3
GM10847
3
GM12872
3
GM18526
3
GM18951
2
NAMALWA
2
SUDHL6
2
blood
2
peripheral blood stem cell
1
GM12874
1
Karpas-422
1
cerebrospinal fluid
1
whole blood
Organ
7
blood
7
bodily fluid
Life stage
4
adult
Date released
3
February, 2021
3
September, 2022
June, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
month_released!
June, 2020
Showing 7 of 7 results
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Download
FileSet
DSR834AMF
released
Annotation file set
: Candidate regulatory elements for BSS00491 HAP-1 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR765USM
released
Annotation file set
: Target gene predictions for BSS00491 HAP-1 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR296VLY
released
Annotation file set
: Chromatin states for BSS00491 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR930MDC
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HAP-1
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR956RSG
released
Annotation file set
: Histone modifications annotation for Blood HAP1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR497ETD
released
Annotation file set
: Binding sites annotation for Blood HAP1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR155AOX
released
Annotation file set
: enhancer-gene predicton of HAP1 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP