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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
41
K562
16
GM12878
8
GM06990
8
GM19240
8
HAP-1
8
HL-60
8
NAMALWA cell
8
OCI-LY7
7
CMK
7
GM12875
7
GM19238
7
GM19239
7
MG63
7
RPMI8226
6
GM12891
6
GM12892
6
KBM-7
6
OCI-LY1
6
SJSA1
6
peripheral blood mononuclear cell
5
L1-S8
5
NB4
5
OCI-LY3
4
GM12873
4
GM18505
4
GM19099
4
GM19193
4
HS-27A
4
HS-5
4
KMS-11
4
L1-S8R
4
NCI-H929
4
U2OS
4
bone tissue
4
femur
4
megakaryocyte
4
stromal cell of bone marrow
3
GM10847
3
GM12872
3
GM18526
3
GM18951
3
arm bone
3
leg bone
3
mononuclear cell of bone marrow
3
peripheral blood stem cell
2
NAMALWA
2
blood
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
GM12874
1
Karpas-422
1
bone cell
1
bone marrow cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
whole blood
Organ
4
bone element
4
limb
4
skeleton
0
blood
Life stage
4
embryonic
Date released
3
September, 2022
1
February, 2021
Software used
2
r
1
chromhmm
1
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
organ_slims!
large intestine
Showing 4 of 4 results
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Download
FileSet
DSR109XPD
released
Annotation file set
: Candidate regulatory elements for BSS00330 femur from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR142LPO
released
Annotation file set
: Target gene predictions for BSS00330 femur from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR009WUH
released
Annotation file set
: Chromatin states for BSS00330 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR499GVD
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE femur
Lab:
AMP-T2D consortium
Project:
AMP