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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
48
thymus
22
foreskin keratinocyte
21
keratinocyte
19
foreskin fibroblast
12
fibroblast of dermis
12
skin fibroblast
10
dermis blood vessel endothelial cell
10
lower leg skin
8
dermis lymphatic vessel endothelial cell
7
GM23248
7
MG63
6
OCI-LY1
6
SJSA1
6
iPS DF 4.7 Cell Line
6
skin of body
5
L1-S8
5
OCI-LY3
5
RPMI7951
5
SK-MEL-5
5
iPS DF 19.11
4
HS-27A
4
HS-5
4
KMS-11
4
L1-S8R
4
NCI-H929
4
U2OS
4
bone tissue
4
dermis microvascular lymphatic vessel endothelial cell
4
femur
4
iPS DF 19.7
4
iPS DF 6.9
4
iPS-11a
4
iPS-15b
4
iPS-18a
4
iPS-18c
4
iPS-20b
4
megakaryocyte
4
stromal cell of bone marrow
3
COLO829
3
arm bone
3
epidermal melanocyte
3
leg bone
3
mononuclear cell of bone marrow
3
suprapubic skin
2
basal cell of epidermis
2
granular cell of epidermis
2
skin of forearm
2
skin of prepuce of penis
1
BJ
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
HGPS cell
1
bone cell
1
bone marrow cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
iPS DF 4.7
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
Organ
5
bone element
0
skin of body
0
thymus
Life stage
4
unknown
Date released
3
September, 2022
1
February, 2021
1
June, 2020
Software used
2
r
1
chromhmm
1
encode-ccres
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR787XSO
released
Annotation file set
: Candidate regulatory elements for BSS01107 L1-S8 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR160KKH
released
Annotation file set
: Target gene predictions for BSS01107 L1-S8 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR960WNO
released
Annotation file set
: Chromatin states for BSS01107 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR293YZV
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE L1-S8
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR833UUW
released
Annotation file set
: Accessible chromatin annotation for Blood L1-S8 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP