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Schema
Citing CMDGA
Clear Filters
Annotation type
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
3
DNase-seq
2
ChIP-seq
Available data
3
bed bed3+
1
bed bed9
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
44
brain
17
caudate nucleus
14
frontal cortex
13
cerebellum
13
putamen
13
substantia nigra
10
Ammon's horn
10
layer of hippocampus
10
pituitary stalk
9
temporal lobe
8
choroid plexus epithelial cell
7
amygdala
7
hypothalamus
7
midbrain
7
nucleus accumbens
6
BE(2)-C
6
SK-N-DZ
6
SK-N-MC
6
SK-N-SH
6
angular gyrus
6
anterior cingulate cortex
6
cerebellum (Hemisphere)
6
globus pallidus
5
cardiac fibroblast
5
cingulate gyrus
5
medulla oblongata
5
pons
4
Brodmann (1909) area 46
4
Daoy
4
U-87 MG
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
middle frontal gyrus
3
A172
3
M059J
3
brain microvascular endothelial cell
3
brain pericyte
3
cerebellar cortex
3
dorsolateral prefrontal cortex
3
inferior parietal cortex
3
medulloblastoma
3
prefrontal cortex
2
H54
2
hippocampal neuron
2
pituitary gland
1
brain microvascular endothelial cell
1
Brodmann (1909) area 9
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Glioblastoma
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
cardiac fibroblast
1
cerebellar hemisphere
1
claustrum of brain
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
dura mater
1
entorhinal cortex
1
frontal pole
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
mid-frontal lobe
1
myelencephalon
1
nucleus of ventral thalamus
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary
1
pontine tegmentum
1
precentral gyrus
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
septal nuclear complex
1
subiculum
1
superior parietal cortex
1
temporal pole
1
thalamic complex
1
undifferentiated ESC (H9 cell line)
Organ
4
brain
Life stage
2
unknown
Date released
2
September, 2022
1
January, 2020
1
May, 2020
Software used
1
chromhmm
1
deltasvm
1
macs
1
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
candidate regulatory elements
Showing 4 of 4 results
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Download
FileSet
DSR113KBA
released
Annotation file set
: Target gene predictions for BSS00091 astrocyte of the hippocampus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR857WOI
released
Annotation file set
: Chromatin states for BSS00091 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR565ZWS
released
Annotation file set
: Genetic variants with deltaSVM predictions in brain hippocampus astrocyte DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR152JXW
released
Annotation file set
: Accessible chromatin annotation of brain hippocampus astrocyte from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP