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Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
3
target gene predictions
2
chromatin state
1
accessible chromatin
1
histone modifications
Annotation Category
3
Target gene links
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
Capture-C
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
cell line
1
in vitro differentiated cells
Biosample term
16
brain
10
pituitary stalk
3
SK-N-SH
3
caudate nucleus
3
layer of hippocampus
2
Ammon's horn
2
Brodmann (1909) area 46
2
SK-N-DZ
2
angular gyrus
2
cerebellum
2
cingulate gyrus
2
frontal cortex
2
substantia nigra
2
temporal lobe
1
A172
1
BE(2)-C
1
Daoy
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
H54
1
M059J
1
SK-N-MC
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
cerebellar cortex
1
choroid plexus epithelial cell
1
dorsolateral prefrontal cortex
1
globus pallidus
1
inferior parietal cortex
1
medulla oblongata
1
medulloblastoma
1
midbrain
1
middle frontal gyrus
1
pons
1
putamen
1
undifferentiated ESC (H9 cell line)
Disease term
2
neuroblastoma
Organ
3
brain
Life stage
2
child
Date released
2
September, 2022
1
September, 2023
Software used
2
r
1
chicago
Lab
2
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Project
3
AMP
RFA
2
AMP
1
AMP2
Showing 3 of 3 results
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Download
FileSet
DSR383OMT
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC derived Hypothalamic Progenitor (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR564FAH
released
Annotation file set
: Target gene predictions for BSS01558 SK-N-DZ from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR194OTQ
released
Annotation file set
: Target gene predictions for BSS01554 SK-N-DZ from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP