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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
1
Genetic variant effects
Target gene links
Annotation type Category
4
DNase-seq
3
ChIP-seq
Available data
4
bed bed3+
1
bed bed9
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
57
brain
19
caudate nucleus
16
substantia nigra
14
cerebellum
14
frontal cortex
14
putamen
13
layer of hippocampus
12
temporal lobe
10
Ammon's horn
9
choroid plexus epithelial cell
8
SK-N-DZ
8
angular gyrus
7
SK-N-MC
7
SK-N-SH
7
amygdala
7
cingulate gyrus
7
globus pallidus
7
hypothalamus
7
midbrain
7
nucleus accumbens
6
BE(2)-C
6
anterior cingulate cortex
6
cerebellum (Hemisphere)
5
cardiac fibroblast
5
Daoy
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
medulla oblongata
5
middle frontal gyrus
5
pons
4
A172
4
Brodmann (1909) area 46
4
M059J
4
U-87 MG
4
brain microvascular endothelial cell
4
brain pericyte
4
cerebellar cortex
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
3
H54
3
inferior parietal cortex
3
medulloblastoma
3
prefrontal cortex
2
dorsolateral prefrontal cortex
2
hippocampal neuron
2
middle frontal area 46
2
pituitary gland
1
brain microvascular endothelial cell
1
BE2C
1
Brodmann (1909) area 9
1
Glioblastoma
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
cardiac fibroblast
1
cerebellar hemisphere
1
claustrum of brain
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
dura mater
1
entorhinal cortex
1
frontal pole
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
mid-frontal lobe
1
myelencephalon
1
nucleus of ventral thalamus
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary
1
pontine tegmentum
1
precentral gyrus
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
septal nuclear complex
1
subiculum
1
superior parietal cortex
1
temporal pole
1
thalamic complex
Organ
5
brain
Life stage
3
unknown
Date released
2
September, 2022
1
February, 2021
1
January, 2020
1
May, 2020
Software used
1
chromhmm
1
deltasvm
1
encode-ccres
1
macs
1
r
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_category!
Target gene links
Showing 5 of 5 results
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Download
FileSet
DSR679IUJ
released
Annotation file set
: Candidate regulatory elements for BSS00090 astrocyte of the cerebellum from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR718VYK
released
Annotation file set
: Chromatin states for BSS00090 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR967JTX
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE astrocyte of the cerebellum
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR019JSU
released
Annotation file set
: Genetic variants with deltaSVM predictions in brain cerebellum astrocyte DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR656EMP
released
Annotation file set
: Accessible chromatin annotation of brain cerebellum astrocyte from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP