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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
5
DNase-seq
4
ChIP-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
67
brain
15
layer of hippocampus
13
caudate nucleus
13
temporal lobe
11
substantia nigra
10
angular gyrus
9
SK-N-DZ
9
SK-N-SH
9
cingulate gyrus
8
cerebellum
7
SK-N-MC
7
choroid plexus epithelial cell
6
BE(2)-C
6
Brodmann (1909) area 46
6
frontal cortex
5
Daoy
5
globus pallidus
5
midbrain
5
putamen
4
A172
4
Ammon's horn
4
H54
4
M059J
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
brain microvascular endothelial cell
4
cerebellar cortex
4
medulloblastoma
4
middle frontal gyrus
3
U-87 MG
3
inferior parietal cortex
3
medulla oblongata
3
pons
2
middle frontal area 46
2
prefrontal cortex
1
BE2C
1
Brodmann (1909) area 9
1
amygdala
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
brain pericyte
1
cardiac fibroblast
1
claustrum of brain
1
dentate nucleus
1
dorsal lateral geniculate nucleus
1
dura mater
1
entorhinal cortex
1
frontal pole
1
hypothalamus
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
mid-frontal lobe
1
myelencephalon
1
nucleus accumbens
1
nucleus of ventral thalamus
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary gland
1
pontine tegmentum
1
precentral gyrus
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
septal nuclear complex
1
subiculum
1
superior parietal cortex
1
temporal pole
1
thalamic complex
Organ
4
brain
Life stage
4
unknown
Date released
3
September, 2022
1
February, 2021
Software used
2
r
1
chromhmm
1
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR489AIN
released
Annotation file set
: Candidate regulatory elements for BSS00091 astrocyte of the hippocampus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR113KBA
released
Annotation file set
: Target gene predictions for BSS00091 astrocyte of the hippocampus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR857WOI
released
Annotation file set
: Chromatin states for BSS00091 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR990VSV
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE astrocyte of the hippocampus
Lab:
AMP-T2D consortium
Project:
AMP