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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
71
brain
20
caudate nucleus
17
substantia nigra
16
layer of hippocampus
15
cerebellum
14
frontal cortex
14
temporal lobe
13
putamen
10
Ammon's horn
10
SK-N-DZ
10
SK-N-SH
10
angular gyrus
10
pituitary stalk
9
choroid plexus epithelial cell
9
cingulate gyrus
8
SK-N-MC
8
midbrain
7
BE(2)-C
7
globus pallidus
6
Brodmann (1909) area 46
6
Daoy
6
amygdala
6
hypothalamus
6
medulla oblongata
6
nucleus accumbens
5
A172
5
M059J
5
anterior cingulate cortex
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
cerebellum (Hemisphere)
5
middle frontal gyrus
5
pons
4
H54
4
U-87 MG
4
brain microvascular endothelial cell
4
cerebellar cortex
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
inferior parietal cortex
4
medulloblastoma
3
brain pericyte
3
dorsolateral prefrontal cortex
3
prefrontal cortex
2
cardiac fibroblast
2
hippocampal neuron
2
middle frontal area 46
2
pituitary gland
1
brain microvascular endothelial cell
1
BE2C
1
Brodmann (1909) area 9
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Glioblastoma
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
cardiac fibroblast
1
cerebellar hemisphere
1
claustrum of brain
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
dura mater
1
entorhinal cortex
1
frontal pole
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
mid-frontal lobe
1
myelencephalon
1
nucleus of ventral thalamus
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary
1
pontine tegmentum
1
precentral gyrus
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
septal nuclear complex
1
subiculum
1
superior parietal cortex
1
temporal pole
1
thalamic complex
1
undifferentiated ESC (H9 cell line)
Organ
4
blood vessel
4
brain
4
epithelium
4
vasculature
Life stage
4
unknown
Date released
3
September, 2022
1
February, 2021
January, 2020
Software used
2
r
1
chromhmm
1
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
month_released!
January, 2020
Showing 4 of 4 results
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Download
FileSet
DSR205TDH
released
Annotation file set
: Candidate regulatory elements for BSS00143 brain microvascular endothelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR658UET
released
Annotation file set
: Target gene predictions for BSS00143 brain microvascular endothelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR909RVE
released
Annotation file set
: Chromatin states for BSS00143 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR636KAE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE brain microvascular endothelial cell
Lab:
AMP-T2D consortium
Project:
AMP