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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
67
brain
19
caudate nucleus
17
substantia nigra
14
cerebellum
14
frontal cortex
14
layer of hippocampus
13
temporal lobe
12
putamen
10
Ammon's horn
10
SK-N-SH
10
angular gyrus
10
pituitary stalk
9
cingulate gyrus
8
SK-N-DZ
6
Brodmann (1909) area 46
6
amygdala
6
anterior cingulate cortex
6
cerebellum (Hemisphere)
6
choroid plexus epithelial cell
6
hypothalamus
6
nucleus accumbens
5
SK-N-MC
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
globus pallidus
5
medulla oblongata
5
midbrain
5
middle frontal gyrus
4
A172
4
BE(2)-C
4
Daoy
4
H54
4
M059J
4
brain microvascular endothelial cell
4
cerebellar cortex
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
pons
3
dorsolateral prefrontal cortex
3
inferior parietal cortex
3
medulloblastoma
2
cardiac fibroblast
2
brain pericyte
2
middle frontal area 46
1
brain microvascular endothelial cell
1
BE2C
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
U-87 MG
1
cardiac fibroblast
1
cerebellar hemisphere
1
diencephalon
1
hippocampal neuron
1
mid-frontal lobe
1
pituitary
1
pituitary gland
1
undifferentiated ESC (H9 cell line)
Organ
4
blood vessel
4
brain
4
epithelium
4
vasculature
Life stage
4
unknown
Date released
3
September, 2022
1
February, 2021
Software used
2
r
1
chromhmm
1
encode-ccres
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
software_used.software.name!
macs
Showing 4 of 4 results
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Download
FileSet
DSR205TDH
released
Annotation file set
: Candidate regulatory elements for BSS00143 brain microvascular endothelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR658UET
released
Annotation file set
: Target gene predictions for BSS00143 brain microvascular endothelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR909RVE
released
Annotation file set
: Chromatin states for BSS00143 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR636KAE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE brain microvascular endothelial cell
Lab:
AMP-T2D consortium
Project:
AMP