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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
candidate regulatory elements
4
chromatin state
3
Fine-mapped variants
3
target gene predictions
2
accessible chromatin
2
eQTL
1
gene expression
1
histone modifications
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
3
Genetic variant effects
Annotation type Category
4
ChIP-seq
3
RNA-seq
Available data
3
bed bed9
3
tsv
1
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
6
GRCh38
Organism
7
Homo sapiens
Biosample type
7
tissue
Biosample term
18
brain
7
caudate nucleus
6
substantia nigra
5
cerebellum
5
frontal cortex
5
temporal lobe
4
Ammon's horn
4
angular gyrus
4
layer of hippocampus
4
putamen
3
amygdala
3
anterior cingulate cortex
3
cerebellum (Hemisphere)
3
cingulate gyrus
3
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
3
hypothalamus
3
nucleus accumbens
2
Brodmann (1909) area 46
2
SK-N-DZ
2
SK-N-SH
1
A172
1
BE(2)-C
1
Daoy
1
H54
1
M059J
1
SK-N-MC
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
cerebellar cortex
1
choroid plexus epithelial cell
1
globus pallidus
1
inferior parietal cortex
1
medulla oblongata
1
medulloblastoma
1
mid-frontal lobe
1
midbrain
1
middle frontal gyrus
1
pons
Organ
7
brain
Life stage
6
adult
Date released
3
March, 2020
3
September, 2022
1
August, 2017
Software used
4
chromhmm
1
gtex_finemapping_eQTL:caveman
1
gtex_finemapping_eQTL:caviar
1
gtex_finemapping_eQTL:dapg
Lab
6
AMP-T2D consortium
1
Stephen Parker, UMich
Project
7
AMP
RFA
7
AMP
Showing 7 of 7 results
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FileSet
DSR133TZK
released
Annotation file set
: Chromatin states for BSS00175 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR532MZI
released
Annotation file set
: Chromatin states for BSS00174 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR640QCY
released
Annotation file set
: Chromatin states for BSS00173 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR032CRB
released
Annotation file set
: Fine-mapping results from DAPG of caudate nucleus for GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR259XOJ
released
Annotation file set
: Fine-mapping results from CAVIAR of caudate nucleus for GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR517HZI
released
Annotation file set
: Fine-mapping results from CaVEMaN of caudate nucleus for GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR952582
released
Annotation file set
: ChromHMM 13-state model for Anterior caudate
Lab:
Stephen Parker, UMich
Project:
AMP