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Schema
Citing CMDGA
Clear Filters
Annotation type
5
candidate regulatory elements
3
Fine-mapped variants
3
chromatin state
3
eQTL
2
target gene predictions
1
gene expression
1
histone modifications
Annotation Category
8
cis-regulatory elements
Annotation type Category
8
ChIP-seq
5
DNase-seq
Available data
6
bed bed3+
2
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
8
tissue
Biosample term
47
brain
10
layer of hippocampus
10
temporal lobe
9
caudate nucleus
8
angular gyrus
8
substantia nigra
7
cingulate gyrus
6
SK-N-DZ
6
SK-N-SH
5
cerebellum
4
Brodmann (1909) area 46
4
frontal cortex
3
A172
3
Ammon's horn
3
Daoy
3
H54
3
M059J
3
SK-N-MC
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
brain microvascular endothelial cell
3
cerebellar cortex
3
choroid plexus epithelial cell
3
globus pallidus
3
middle frontal gyrus
3
putamen
2
BE(2)-C
2
inferior parietal cortex
2
medulla oblongata
2
medulloblastoma
2
midbrain
2
middle frontal area 46
2
pons
1
BE2C
1
brain pericyte
1
mid-frontal lobe
Organ
8
brain
Life stage
7
adult
Date released
4
September, 2022
3
February, 2021
1
August, 2017
Software used
3
chromhmm
3
encode-ccres
2
r
Lab
7
AMP-T2D consortium
1
Stephen Parker, UMich
Project
8
AMP
RFA
8
AMP
Showing 8 of 8 results
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Download
FileSet
DSR875SUW
released
Annotation file set
: Candidate regulatory elements for BSS01676 substantia nigra from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR466FJE
released
Annotation file set
: Candidate regulatory elements for BSS01675 substantia nigra from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR065QGY
released
Annotation file set
: Chromatin states for BSS01676 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR373BCA
released
Annotation file set
: Chromatin states for BSS01675 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR162AWQ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE substantia nigra
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR848MZM
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE substantia nigra
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR057XCU
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE substantia nigra
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR828132
released
Annotation file set
: ChromHMM 13-state model for substantia nigra
Lab:
Stephen Parker, UMich
Project:
AMP