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Schema
Citing CMDGA
Clear Filters
Annotation type
6
chromatin state
3
candidate regulatory elements
3
target gene predictions
2
accessible chromatin
1
binding sites
1
gene expression
1
variant allelic effects
Annotation Category
6
cis-regulatory elements
Annotation type Category
6
ChIP-seq
Available data
5
bed bed9
2
bigBed bed9
1
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
5
GRCh38
Organism
6
Homo sapiens
Biosample type
5
tissue
1
primary cell
Biosample term
18
brain
5
temporal lobe
4
angular gyrus
4
caudate nucleus
4
layer of hippocampus
3
cingulate gyrus
3
substantia nigra
2
Brodmann (1909) area 46
2
SK-N-DZ
2
SK-N-SH
2
cerebellum
2
frontal cortex
1
A172
1
Ammon's horn
1
BE(2)-C
1
Daoy
1
H54
1
M059J
1
SK-N-MC
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
cerebellar cortex
1
choroid plexus epithelial cell
1
globus pallidus
1
inferior parietal cortex
1
medulla oblongata
1
medulloblastoma
1
mid-frontal lobe
1
midbrain
1
middle frontal gyrus
1
pons
1
putamen
Organ
6
brain
1
epithelium
1
vasculature
Life stage
4
adult
1
unknown
Date released
3
September, 2022
2
May, 2019
1
August, 2017
Software used
6
chromhmm
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
6
AMP
month_released!
February, 2021
Showing 6 of 6 results
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Download
FileSet
DSR845QCJ
released
Annotation file set
: Chromatin states for BSS01714 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR518MEA
released
Annotation file set
: Chromatin states for BSS01712 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR525PVH
released
Annotation file set
: Chromatin states for BSS00218 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR708XYC
released
Annotation file set
: ChromHMM 18-state model for temporal lobe from ENCODE ChIP-seq data. ROADMAP Brain Inferior Temporal Lobe Annotation
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR097ASI
released
Annotation file set
: ChromHMM 15-state model for temporal lobe from ENCODE ChIP-seq data. ROADMAP Brain Inferior Temporal Lobe Annotation
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR798820
released
Annotation file set
: ChromHMM 13-state model for Inferior temporal lobe
Lab:
Stephen Parker, UMich
Project:
AMP