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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
56
brain
19
caudate nucleus
16
frontal cortex
14
cerebellum
14
substantia nigra
13
putamen
11
Ammon's horn
11
layer of hippocampus
10
pituitary stalk
10
temporal lobe
8
SK-N-SH
8
angular gyrus
7
SK-N-DZ
7
choroid plexus epithelial cell
7
cingulate gyrus
6
Brodmann (1909) area 46
6
amygdala
6
anterior cingulate cortex
6
cerebellum (Hemisphere)
6
globus pallidus
6
hypothalamus
6
medulla oblongata
6
midbrain
6
nucleus accumbens
6
pons
5
cardiac fibroblast
5
BE(2)-C
5
SK-N-MC
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
middle frontal gyrus
4
A172
4
Daoy
4
M059J
4
brain microvascular endothelial cell
4
cerebellar cortex
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
inferior parietal cortex
3
H54
3
brain pericyte
3
medulloblastoma
2
U-87 MG
2
dorsolateral prefrontal cortex
2
hippocampal neuron
1
brain microvascular endothelial cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Glioblastoma
1
cardiac fibroblast
1
cerebellar hemisphere
1
diencephalon
1
mid-frontal lobe
1
pituitary
1
pituitary gland
1
prefrontal cortex
1
undifferentiated ESC (H9 cell line)
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
month_released!
February, 2021
organ_slims!
lymph node
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP