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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
1
bed bed9
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
56
brain
19
caudate nucleus
16
frontal cortex
14
cerebellum
14
substantia nigra
13
putamen
11
Ammon's horn
11
layer of hippocampus
10
pituitary stalk
10
temporal lobe
8
SK-N-SH
8
angular gyrus
7
SK-N-DZ
7
choroid plexus epithelial cell
7
cingulate gyrus
6
Brodmann (1909) area 46
6
amygdala
6
anterior cingulate cortex
6
cerebellum (Hemisphere)
6
globus pallidus
6
hypothalamus
6
medulla oblongata
6
midbrain
6
nucleus accumbens
6
pons
5
cardiac fibroblast
5
BE(2)-C
5
SK-N-MC
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
middle frontal gyrus
4
A172
4
Daoy
4
M059J
4
brain microvascular endothelial cell
4
cerebellar cortex
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
inferior parietal cortex
4
olfactory neurosphere cell line
3
H54
3
brain pericyte
3
medulloblastoma
2
U-87 MG
2
dorsolateral prefrontal cortex
2
hippocampal neuron
1
brain microvascular endothelial cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Glioblastoma
1
cardiac fibroblast
1
cerebellar hemisphere
1
diencephalon
1
mid-frontal lobe
1
pituitary
1
pituitary gland
1
prefrontal cortex
1
undifferentiated ESC (H9 cell line)
Organ
4
blood vessel
4
brain
4
epithelium
4
vasculature
0
nose
Life stage
3
unknown
Date released
3
September, 2022
February, 2021
1
January, 2020
Software used
2
r
1
chromhmm
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
month_released!
February, 2021
Showing 4 of 4 results
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Download
FileSet
DSR205TDH
released
Annotation file set
: Candidate regulatory elements for BSS00143 brain microvascular endothelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR658UET
released
Annotation file set
: Target gene predictions for BSS00143 brain microvascular endothelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR909RVE
released
Annotation file set
: Chromatin states for BSS00143 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR491SOC
released
Annotation file set
: Accessible chromatin annotation of brain microvascular endothelial cell from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP