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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
in vitro differentiated cells
Biosample term
73
brain
54
H1-hESC
23
trophoblast cell
22
caudate nucleus
18
substantia nigra
16
H9
16
cerebellum
16
chorionic villus
16
frontal cortex
16
layer of hippocampus
15
putamen
14
temporal lobe
12
Ammon's horn
11
trophoblast
10
SK-N-DZ
10
SK-N-SH
10
angular gyrus
10
choroid plexus epithelial cell
10
endodermal cell
10
pituitary stalk
9
cingulate gyrus
8
SK-N-MC
8
globus pallidus
8
mesodermal cell
8
midbrain
7
BE(2)-C
7
amygdala
7
hypothalamus
7
nucleus accumbens
6
Brodmann (1909) area 46
6
Daoy
6
H7-hESC
6
HUES6
6
HUES8
6
anterior cingulate cortex
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
cerebellum (Hemisphere)
6
medulla oblongata
6
middle frontal gyrus
6
pons
5
cardiac fibroblast
5
A172
5
CyT49
5
H4
5
HUES64
5
M059J
5
brain microvascular endothelial cell
5
cerebellar cortex
5
ectodermal cell
4
ELF-1
4
H54
4
HUES48
4
U-87 MG
4
UCSF-4
4
brain pericyte
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
embryonic facial prominence
4
inferior parietal cortex
4
medulloblastoma
3
ES-I3
3
cardiac mesoderm primordium
3
dorsolateral prefrontal cortex
3
hESC H9
3
prefrontal cortex
3
primordial germ cell
2
first pancreatic bud
2
hippocampal neuron
2
middle frontal area 46
2
pituitary gland
1
brain microvascular endothelial cell
1
BE2C
1
Brodmann (1909) area 9
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Glioblastoma
1
H1
1
H7
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
cardiac fibroblast
1
cardiogenic mesoderm
1
cerebellar hemisphere
1
claustrum of brain
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
dura mater
1
embryonic fibroblast
1
entorhinal cortex
1
frontal pole
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
mid-frontal lobe
1
morula
1
myelencephalon
1
nucleus of ventral thalamus
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary
1
placental hematopoietic stem cell
1
pontine tegmentum
1
precentral gyrus
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
septal nuclear complex
1
subiculum
1
superior parietal cortex
1
temporal pole
1
thalamic complex
1
trophoblast giant cell
1
undifferentiated ESC (H9 cell line)
Organ
3
embryo
0
brain
Life stage
3
embryonic
Date released
3
September, 2022
Software used
2
r
1
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
Showing 3 of 3 results
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Download
FileSet
DSR289IIV
released
Annotation file set
: Candidate regulatory elements for BSS00169 cardiac mesoderm primordium from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR890RKI
released
Annotation file set
: Target gene predictions for BSS00169 cardiac mesoderm primordium from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR372DTL
released
Annotation file set
: Chromatin states for BSS00169 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP