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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
in vitro differentiated cells
Biosample term
73
brain
68
lung
62
A549
52
left lung
45
right lung
22
caudate nucleus
18
substantia nigra
16
cerebellum
16
fibroblast of lung
16
frontal cortex
16
layer of hippocampus
16
upper lobe of left lung
15
putamen
14
temporal lobe
12
Ammon's horn
10
SK-N-DZ
10
SK-N-SH
10
angular gyrus
10
choroid plexus epithelial cell
10
pituitary stalk
9
IMR-90
9
cingulate gyrus
8
PC-9
8
SK-N-MC
8
globus pallidus
8
midbrain
7
BE(2)-C
7
WI38
7
amygdala
7
hypothalamus
7
nucleus accumbens
7
type II pneumocyte
6
Brodmann (1909) area 46
6
Daoy
6
anterior cingulate cortex
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
cerebellum (Hemisphere)
6
medulla oblongata
6
middle frontal gyrus
6
pons
5
cardiac fibroblast
5
A172
5
M059J
5
brain microvascular endothelial cell
5
cerebellar cortex
5
lung microvascular endothelial cell
4
H54
4
NCI-H226 cell
4
NCI-H460 cell
4
U-87 MG
4
brain pericyte
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
inferior parietal cortex
4
medulloblastoma
4
type I pneumocyte
3
dorsolateral prefrontal cortex
3
prefrontal cortex
2
hippocampal neuron
2
middle frontal area 46
2
pituitary gland
1
brain microvascular endothelial cell
1
BE2C
1
Brodmann (1909) area 9
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Glioblastoma
1
NCI-H226
1
NCI-H460
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
cardiac fibroblast
1
cerebellar hemisphere
1
claustrum of brain
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
dura mater
1
endothelial cell of artery
1
entorhinal cortex
1
frontal pole
1
locus ceruleus
1
lung neuroendocrine cell
1
medial dorsal nucleus of thalamus
1
mid-frontal lobe
1
myelencephalon
1
nucleus of ventral thalamus
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary
1
pontine tegmentum
1
precentral gyrus
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
septal nuclear complex
1
subiculum
1
superior parietal cortex
1
temporal pole
1
thalamic complex
1
undifferentiated ESC (H9 cell line)
Organ
1
brain
0
lung
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
Showing 1 of 1 results
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Download
FileSet
DSR383OMT
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC derived Hypothalamic Progenitor (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP