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Annotation type
3
accessible chromatin
1
caQTL
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
ATAC-seq
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
16
brain
16
muscle of arm
14
muscle of leg
13
muscle of back
10
pituitary stalk
8
psoas muscle
5
gastrocnemius medialis
5
muscle of trunk
3
SK-N-SH
3
caudate nucleus
3
layer of hippocampus
3
skeletal muscle tissue
2
A673
2
Ammon's horn
2
Brodmann (1909) area 46
2
SK-N-DZ
2
angular gyrus
2
cerebellum
2
cingulate gyrus
2
esophagus muscularis mucosa
2
frontal cortex
2
skeletal muscle satellite cell
2
stomach smooth muscle
2
substantia nigra
2
temporal lobe
1
A172
1
BE(2)-C
1
Daoy
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
H54
1
LHCN-M2
1
M059J
1
SJCRH30
1
SK-N-MC
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
cerebellar cortex
1
choroid plexus epithelial cell
1
dorsolateral prefrontal cortex
1
gastroesophageal sphincter
1
globus pallidus
1
inferior parietal cortex
1
medulla oblongata
1
medulloblastoma
1
midbrain
1
middle frontal gyrus
1
myotube
1
pons
1
putamen
1
rectum smooth muscle tissue
1
skeletal muscle cell
1
type I muscle cell
1
type II muscle cell
1
undifferentiated ESC (H9 cell line)
Organ
1
musculature of body
0
brain
Date released
1
November, 2021
Software used
1
abc
Lab
1
Bing Ren, UCSD
Project
1
ENCODE
RFA
1
ENCODE3
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Download
FileSet
DSR018YPM
released
Annotation file set
: Target gene predictions of Type II Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE