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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
1
accessible chromatin
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
2
ChIP-seq
1
ATAC-seq
1
snATAC-seq
Available data
2
bed bed3+
2
bed bed9
1
bigWig
File set status
4
released
Genome assembly (visualization)
16
hg19
4
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
2
bronchial epithelial cell
2
club cell
Organ
234
epithelium
152
brain
122
connective tissue
105
kidney
96
musculature of body
93
heart
87
vasculature
80
embryo
80
lung
79
intestine
78
limb
74
blood vessel
61
pancreas
60
liver
58
uterus
53
bodily fluid
51
blood
47
skin of body
43
large intestine
37
extraembryonic component
33
stomach
28
artery
25
adrenal gland
24
small intestine
23
adipose tissue
23
bone element
20
mammary gland
19
placenta
16
eye
16
ureter
14
esophagus
14
prostate gland
13
gonad
13
spinal cord
12
thymus
11
nerve
11
skeleton
10
penis
8
lymph node
8
spleen
7
ovary
7
thyroid gland
6
lymphoid tissue
6
testis
5
lymphatic vessel
5
mouth
5
vein
4
bronchus
breast
3
vagina
2
bone marrow
2
tongue
2
urinary bladder
1
nose
1
pituitary gland
Life stage
2
unknown
Date released
2
November, 2021
2
September, 2022
Software used
2
chromhmm
1
abc
1
macs
Lab
2
AMP-T2D consortium
2
Bing Ren, UCSD
Project
2
AMP
2
ENCODE
RFA
2
AMP
2
ENCODE3
organ_slims!
breast
Showing 4 of 4 results
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Download
FileSet
DSR702JKN
released
Annotation file set
: Chromatin states for BSS00153 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR524OJC
released
Annotation file set
: Chromatin states for BSS00150 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR905LLL
released
Annotation file set
: Target gene predictions of Club Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR678WWH
released
Annotation file set
: Accessible chromatin annotation of Club Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE