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Citing CMDGA
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Annotation type
2
candidate regulatory elements
1
chromatin state
target gene predictions
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
28
fibroblast
24
adipose tissue
21
adipocyte
21
subcutaneous adipose tissue
16
foreskin fibroblast
16
omental fat pad
15
mesenchymal stem cell
15
osteoblast
13
fibroblast of cardiac tissue
12
fibroblast of lung
11
pericyte cell
10
hepatic stellate cell
9
pancreatic stellate cell
9
skin fibroblast
8
fibroblast of dermis
7
chondrocyte
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
mesangial cell
6
GM23248
6
subcutaneous abdominal adipose tissue
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Fibroblast
5
Mesangial Cell
5
cardiac fibroblast
5
cartilage tissue
4
bone tissue
4
brain pericyte
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
fibroblast of the conjunctiva
4
preadipocyte
4
visceral abdominal adipose tissue
3
HT1080
3
adult endothelial progenitor cell
3
fibroblast of gingiva
3
pancreatic quiescent stellate cell
3
pulmonary interstitial fibroblast
3
stromal cell of bone marrow
2
adipose tissue derived mesenchymal stem cell
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
articular chondrocyte
2
columnar chondrocyte
1
omental fat pad
1
Adipose SGBS cell line (adipocyte)
1
Preadipose SGBS cell line (adipocyte)
1
SGBS preadipocytes
1
activated pancreatic stellate cell
1
adipose-derived mesenchymal stem cell
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
embryonic fibroblast
1
fat cell
1
fibroblast of skin of abdomen
1
kidney interstitial fibroblast
1
luteal cell
1
mesenchymal stem cell of adipose
1
pericardium fibroblast
1
quiescent pancreatic stellate cell
1
stromal cell
Disease term
2
fibrosarcoma
Organ
3
connective tissue
Life stage
3
adult
Date released
2
September, 2022
1
February, 2021
Software used
1
chromhmm
1
encode-ccres
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
annotation_type!
target gene predictions
award.project!
LungMap
Showing 3 of 3 results
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Download
FileSet
DSR838AAN
released
Annotation file set
: Candidate regulatory elements for BSS00709 HT1080 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR488OIF
released
Annotation file set
: Chromatin states for BSS00709 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR542MAT
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HT1080
Lab:
AMP-T2D consortium
Project:
AMP