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Annotation type
3
eQTL
2
pQTL
Annotation Category
5
Genetic variant effects
Annotation type Category
3
RNA-seq
2
quantitative proteomics
Available data
1
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
4
cartilage tissue
1
subcutaneous adipose tissue
Organ
5
connective tissue
2
pancreas
1
adipose tissue
Life stage
5
adult
Date released
4
August, 2021
1
February, 2021
Software used
132
r
130
macs
59
chromhmm
40
encode-ccres
31
abc
16
deltasvm
9
qTLtools
6
deseq2
5
fastqtl
4
chicago
4
peer
2
deeptools
2
gtex_eqtl:V8
2
gtex_finemapping_eQTL:caveman
2
gtex_finemapping_eQTL:caviar
2
gtex_finemapping_eQTL:dapg
2
mach2qtl
2
nospecificsoft_customcode
2
rasqual
2
samtools
2
umitools
1
cicero
1
eigenmt
1
emmax
1
epacts
1
fast-lmm
1
matrix-eQTL
1
probabel
1
seurat
1
unknown
Lab
4
ITG
1
Karen Mohlke, UNC
Project
4
ITG
1
AMP
RFA
4
ITG
1
AMP
biosample_term_name!
Adaptive / Maladaptive / Repairing Fibroblast
Showing 5 of 5 results
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FileSet
DSR524ZAH
released
Annotation file set
: pQTL of low-grade (intact; preserved) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR651XSZ
released
Annotation file set
: pQTL of high grade (highly degraded; lesioned) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR376WYD
released
Annotation file set
: eQTL of high grade (highly degraded; lesioned) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR276XRX
released
Annotation file set
: eQTL of low-grade (intact; preserved) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR965YTD
released
Annotation file set
: METSIM RNAseq local eQTLs – all results, including non-significant cis-eQTLs
Lab:
Karen Mohlke, UNC
Project:
AMP