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Schema
Citing CMDGA
Clear Filters
Annotation type
8
target gene predictions
7
candidate regulatory elements
6
chromatin state
4
eQTL
3
gene expression
2
accessible chromatin
1
binding sites
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
3
ATAC-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
22
fibroblast
10
pericyte cell
7
adipocyte
5
cardiac fibroblast
5
chondrocyte
5
osteoblast
4
fibroblast of cardiac tissue
4
hepatic stellate cell
4
pancreatic stellate cell
3
adipose tissue
3
brain pericyte
3
mesenchymal stem cell
3
skin fibroblast
3
subcutaneous adipose tissue
2
extracellular matrix secreting cell
2
mesangial cell
2
omental fat pad
1
omental fat pad
1
Adipose SGBS cell line (adipocyte)
1
GM23248
1
Preadipose SGBS cell line (adipocyte)
1
SGBS preadipocytes
1
adipose-derived mesenchymal stem cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
foreskin fibroblast
1
luteal cell
1
preadipocyte
1
pulmonary interstitial fibroblast
1
stromal cell
Organ
3
adipose tissue
3
connective tissue
Date released
1
January, 2020
1
May, 2020
1
November, 2022
Software used
2
macs
1
deltasvm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
Showing 3 of 3 results
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Download
FileSet
DSR315TSA
released
Annotation file set
: Accessible chromatin of subcutaneous adipose tissue of 11 out of 17 individuals to generate chromatin accessibility profiles
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR088HBN
released
Annotation file set
: Genetic variants with deltaSVM predictions in adipose subcutaneous ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR849UDT
released
Annotation file set
: Adipose subcutaneous accessible chromatin annotation
Lab:
AMP-T2D consortium
Project:
AMP