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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
4
target gene predictions
3
accessible chromatin
3
chromatin state
1
binding sites
1
caQTL
1
eQTL
1
gene expression
1
histone modifications
Annotation Category
4
Target gene links
3
cis-regulatory elements
Annotation type Category
4
DNase-seq
2
ChIP-seq
2
snATAC-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
1
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
4
in vitro differentiated cells
2
primary cell
1
stem cell
Biosample term
20
fibroblast
20
pericyte cell
12
adipocyte
10
adipose tissue
8
fibroblast of cardiac tissue
7
mesenchymal stem cell
7
osteoblast
6
skin fibroblast
5
chondrocyte
5
pancreatic stellate cell
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin fibroblast
4
hepatic stellate cell
4
omental fat pad
3
cardiac fibroblast
2
GM23248
2
brain pericyte
2
extracellular matrix secreting cell
2
fibroblast of mammary gland
2
fibroblast of peridontal ligament
2
fibroblast of pulmonary artery
2
fibroblast of the conjunctiva
2
fibroblast of villous mesenchyme
2
luteal cell
2
mesangial cell
2
stromal cell
2
subcutaneous adipose tissue
1
HT1080
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
SGBS preadipocytes
1
adipose-derived mesenchymal stem cell
1
adult endothelial progenitor cell
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
beige adipocyte
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
fat cell
1
fibroblast of arm
1
fibroblast of gingiva
1
fibroblast of the aortic adventitia
1
preadipocyte
1
pulmonary interstitial fibroblast
1
stromal cell of bone marrow
1
white adipose cell
1
white adipose tissue
Organ
7
connective tissue
Life stage
1
adult
1
embryonic
1
unknown
Date released
2
September, 2022
1
February, 2024
1
June, 2020
1
March, 2020
1
May, 2021
1
May, 2022
Software used
3
macs
2
r
1
abc
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
7
AMP
RFA
6
AMP
1
AMP2
Showing 7 of 7 results
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Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP