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Schema
Citing CMDGA
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Annotation type
6
eQTL
5
gene expression
3
Fine-mapped variants
2
accessible chromatin
2
candidate regulatory elements
1
chromatin state
1
differential activity
1
variant allelic effects
Annotation Category
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
ChIP-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
7
adipocyte
7
adipose tissue
6
fibroblast
4
fibroblast of lung
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
mesenchymal stem cell
2
cardiac fibroblast
2
foreskin fibroblast
2
hepatic stellate cell
2
omental fat pad
2
skin fibroblast
2
subcutaneous adipose tissue
1
omental fat pad
1
Adipose SGBS cell line (adipocyte)
1
GM23248
1
HT1080
1
Preadipose SGBS cell line (adipocyte)
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
brain pericyte
1
fibroblast of gingiva
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the aortic adventitia
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
osteoblast
1
pericyte cell
1
stromal cell of bone marrow
1
subcutaneous abdominal adipose tissue
Organ
2
adipose tissue
2
connective tissue
Date released
1
August, 2017
1
May, 2020
Software used
1
chromhmm
1
deltasvm
Lab
1
AMP-T2D consortium
1
Stephen Parker, UMich
Project
2
AMP
RFA
2
AMP
Showing 2 of 2 results
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Download
FileSet
DSR802UOO
released
Annotation file set
: Genetic variants with deltaSVM predictions in adipose white tissue ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR804392
released
Annotation file set
: ChromHMM 13-state model for Adipose
Lab:
Stephen Parker, UMich
Project:
AMP