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Schema
Citing CMDGA
Clear Filters
Annotation type
7
gene expression
1
accessible chromatin
Annotation Category
7
Gene expression levels
1
cis-regulatory elements
Annotation type Category
6
snDropSeq
1
scRNA-seq
1
snATAC-seq
Available data
330
bed bed3+
65
tsv
55
bigWig
41
bed bed9
7
txt
2
bigBed bed9
1
bigBed narrowPeak
File set status
8
released
Genome assembly (visualization)
1
hg19
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
3
adult endothelial progenitor cell
3
mesangial cell
1
kidney interstitial fibroblast
1
pancreatic stellate cell
Organ
92
epithelium
87
kidney
14
pancreas
8
connective tissue
2
vasculature
Life stage
8
adult
Date released
6
February, 2021
1
August, 2021
1
June, 2021
Software used
7
r
1
macs
1
seurat
Lab
6
AMP-T2D consortium
1
Katalin Susztak, Upenn
1
Kyle Gaulton, UCSD
Project
8
AMP
RFA
7
AMP
1
AMP2
Showing 8 of 8 results
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FileSet
DSR802TKP
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Mesangial Cells from GSE121862 snDropSeq kidney regions (medulla)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR178POZ
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Epithelial Cells (unassigned) from GSE121862 snDropSeq kidney regions (medulla)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR952TMF
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Mesangial Cells from GSE121862 snDropSeq kidney regions (cortex)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR947DNI
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Epithelial Cells (unassigned) from GSE121862 snDropSeq kidney regions (cortex)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832BOJ
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for kidney interstitial fibroblast
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR847OYP
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Mesangial Cells from GSE121862 snDropSeq kidney regions (cortex and medulla)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR846HLK
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Epithelial Cells (unassigned) from GSE121862 snDropSeq kidney regions (cortex and medulla)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR364QCE
released
Annotation file set
: pancreatic stellate cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP