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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
2
gene expression
1
target gene predictions
Annotation Category
5
cis-regulatory elements
2
Gene expression levels
1
Target gene links
Annotation type Category
ChIP-seq
7
DNase-seq
3
ATAC-seq
2
RNA-seq
1
H3K27ac ChIP-Seq
Available data
6
bed bed3+
3
bigWig
2
tsv
File set status
8
released
Genome assembly (visualization)
6
hg19
3
GRCh38
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
28
fibroblast
19
pericyte cell
18
subcutaneous adipose tissue
13
adipocyte
12
adipose tissue
10
pancreatic stellate cell
9
omental fat pad
8
mesenchymal stem cell
8
osteoblast
7
mesangial cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Fibroblast
5
Mesangial Cell
5
chondrocyte
5
fibroblast of cardiac tissue
5
hepatic stellate cell
4
adult endothelial progenitor cell
4
bone tissue
4
cartilage tissue
4
skin fibroblast
4
visceral abdominal adipose tissue
3
brain pericyte
3
pancreatic quiescent stellate cell
2
articular chondrocyte
2
extracellular matrix secreting cell
2
fat cell
2
foreskin fibroblast
2
luteal cell
2
stromal cell
1
omental fat pad
1
Adipose SGBS cell line (adipocyte)
1
GM23248
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Preadipose SGBS cell line (adipocyte)
1
SGBS preadipocytes
1
activated pancreatic stellate cell
1
adipose-derived mesenchymal stem cell
1
beige adipocyte
1
cardiac atrium fibroblast
1
cardiac fibroblast
1
cardiac ventricle fibroblast
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
fibroblast of arm
1
fibroblast of dermis
1
fibroblast of lung
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
kidney interstitial fibroblast
1
mesenchymal stem cell of adipose
1
pericardium fibroblast
1
preadipocyte
1
pulmonary interstitial fibroblast
1
quiescent pancreatic stellate cell
1
white adipose cell
1
white adipose tissue
Organ
8
connective tissue
Life stage
3
unknown
2
adult
Date released
3
November, 2020
2
February, 2021
2
June, 2020
1
May, 2021
Software used
5
macs
2
r
1
abc
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
organ_slims!
vasculature
annotation_type_category!
ChIP-seq
Showing 8 of 8 results
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Download
FileSet
DSR906VQP
released
Annotation file set
: GSE120755 DNase-seq accessible chromatin annotation of osteoporosis cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR010PUE
released
Annotation file set
: Accessible chromatin of E-MTAB-6834 - ATAC-seq of primary mesenchymal stem cell (MSC)-derived osteoblasts (differentiated with BMP2) from 4 human donors
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR383TPO
released
Annotation file set
: GSE120755 accessible chromatin annotation of osteoporosis cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR703WRC
released
Annotation file set
: Gene expression annotation of osteoporosis cell from 4 cell lines for GSE120755 RNA-seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR204TLG
released
Annotation file set
: Gene expression annotation of E-MTAB-6835 - RNA-seq of primary mesenchymal stem cells -derived osteoblasts (differentiated with BMP2) from 3 human donors
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR069ZRF
released
Annotation file set
: enhancer-gene predicton of osteoblast-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR028APK
released
Annotation file set
: Accessible chromatin annotation for Bone Osteobl from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR303JQK
released
Annotation file set
: Accessible chromatin annotation for Bone Osteoblasts from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP