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Schema
Citing CMDGA
Clear Filters
Annotation type
2
gene expression
1
accessible chromatin
1
binding sites
1
caQTL
1
histone modifications
1
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Gene expression levels
1
Genetic variant effects
1
Target gene links
Annotation type Category
2
ATAC-seq
2
ChIP-seq
2
RNA-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
snATAC-seq
Available data
5
bed bed3+
1
bigWig
1
tsv
File set status
7
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
4
cell line
3
primary cell
Biosample term
32
adipose tissue
32
fibroblast
27
adipocyte
22
pericyte cell
21
coronary artery
21
subcutaneous adipose tissue
20
endothelial cell of umbilical vein
19
foreskin fibroblast
19
mesenchymal stem cell
19
tibial artery
18
omental fat pad
17
fibroblast of cardiac tissue
17
osteoblast
16
ascending aorta
16
endothelial cell of hepatic sinusoid
16
fibroblast of lung
13
aorta
12
fibroblast of dermis
12
skin fibroblast
11
hepatic stellate cell
11
thoracic aorta
10
dermis blood vessel endothelial cell
10
pancreatic stellate cell
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
7
GM23248
7
chondrocyte
7
mesangial cell
7
pulmonary artery endothelial cell
7
smooth muscle cell of the coronary artery
6
subcutaneous abdominal adipose tissue
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Afferent / Efferent Arteriole Endothelial Cell
5
Degenerative Peritubular Capillary Endothelial Cell
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Mesangial Cell
5
Peritubular Capillary Endothelial Cell
5
brain microvascular endothelial cell
5
cardiac fibroblast
5
cartilage tissue
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
fibroblast of the conjunctiva
5
kidney capillary endothelial cell
4
HT1080
4
adult endothelial progenitor cell
4
aortic endothelial cell
4
bone tissue
4
brain pericyte
4
fibroblast of gingiva
4
pancreatic endothelial cell
4
preadipocyte
4
stromal cell of bone marrow
4
visceral abdominal adipose tissue
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
pancreatic quiescent stellate cell
3
pulmonary interstitial fibroblast
2
adipose tissue derived mesenchymal stem cell
2
articular chondrocyte
2
capillary endothelial cell
2
columnar chondrocyte
2
endothelial cell of coronary artery
2
extracellular matrix secreting cell
2
fat cell
2
luteal cell
2
stromal cell
2
vein endothelial cell
1
brain microvascular endothelial cell
1
omental fat pad
1
Adipose SGBS cell line (adipocyte)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Preadipose SGBS cell line (adipocyte)
1
SGBS preadipocytes
1
abdominal aorta artery
1
activated pancreatic stellate cell
1
adipose-derived mesenchymal stem cell
1
aorta wall
1
aortic smooth muscle cell
1
beige adipocyte
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
circle of Willis
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
embryonic fibroblast
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
kidney interstitial fibroblast
1
mesenchymal stem cell of adipose
1
pericardium fibroblast
1
placental villus capillary endothelial cell
1
quiescent pancreatic stellate cell
1
white adipose cell
1
white adipose tissue
1
whole blood
Organ
7
artery
7
blood vessel
7
heart
7
vasculature
0
connective tissue
Life stage
2
adult
1
unknown
Date released
4
February, 2021
1
February, 2020
1
February, 2023
1
May, 2021
Software used
3
macs
2
r
1
abc
1
rasqual
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
Showing 7 of 7 results
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Download
FileSet
DSR702NJX
released
Annotation file set
: Chromatin accessibility QTLs in smooth muscle cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR442EVO
released
Annotation file set
: Accessible chromatin of smooth muscle cell of the coronary artery from GSE113348 ATAC-seq cell lines
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR938TKW
released
Annotation file set
: Gene expression annotation of smooth muscle cell of the coronary artery for GSE113348
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR951OND
released
Annotation file set
: Histone modifications annotation for Cardiovascular HCASMC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR898IID
released
Annotation file set
: Binding sites annotation for Cardiovascular HCASMC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR886XYE
released
Annotation file set
: enhancer-gene predicton of coronary_artery_smooth_muscle_cell-Miller2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR277QFW
released
Annotation file set
: Gene expression levels of Coronary artery smooth muscle cell from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP