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Schema
Citing CMDGA
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Annotation type
16
accessible chromatin
6
variant allelic effects
4
target gene predictions
2
binding sites
2
eQTL
2
histone modifications
Annotation Category
4
Target gene links
Annotation type Category
4
ATAC-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
17
small intestine
14
large intestine
10
pericyte cell
8
adipose tissue
7
sigmoid colon
6
adipocyte
5
transverse colon
4
colon epithelial cell
4
fibroblast
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
mesenchymal stem cell
3
HCT116
3
Peyer's patch
3
foreskin fibroblast
3
skin fibroblast
2
HT-29
2
colonic mucosa
2
duodenal mucosa
2
enteric smooth muscle cell
2
mucosa of rectum
2
muscle layer of colon
2
muscle layer of duodenum
2
omental fat pad
2
osteoblast
1
GM23248
1
HCT-116 cell
1
HT1080
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
SW480
1
adult endothelial progenitor cell
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
beige adipocyte
1
enterocyte of epithelium of small intestine
1
fat cell
1
fibroblast of arm
1
fibroblast of gingiva
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the aortic adventitia
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
hepatic stellate cell
1
luteal cell
1
pancreatic stellate cell
1
paneth cell
1
rectum smooth muscle tissue
1
small intestine goblet cell
1
stromal cell
1
stromal cell of bone marrow
1
white adipose cell
1
white adipose tissue
Organ
4
connective tissue
0
intestine
Date released
4
November, 2021
Software used
4
abc
Lab
4
Bing Ren, UCSD
Project
4
ENCODE
RFA
4
ENCODE3
Showing 4 of 4 results
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Download
FileSet
DSR418HFM
released
Annotation file set
: Target gene predictions of Fibroblast (Peripheral Nerve) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR611CKC
released
Annotation file set
: Target gene predictions of Fibroblast (Liver Adrenal) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR825WFK
released
Annotation file set
: Target gene predictions of Fibroblast (Gastrointestinal) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR277AWO
released
Annotation file set
: Target gene predictions of Fibroblast (General) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE