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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
81
kidney
42
right kidney
40
renal cortex interstitium
40
renal pelvis
36
left kidney
32
adipose tissue
32
fibroblast
27
adipocyte
23
epithelial cell of proximal tubule
22
pericyte cell
21
glomerular endothelial cell
21
subcutaneous adipose tissue
19
foreskin fibroblast
19
mesenchymal stem cell
18
omental fat pad
17
fibroblast of cardiac tissue
17
osteoblast
16
fibroblast of lung
13
glomerular visceral epithelial cell
12
fibroblast of dermis
12
left renal cortex interstitium
12
left renal pelvis
12
right renal pelvis
12
skin fibroblast
11
hepatic stellate cell
11
right renal cortex interstitium
10
kidney tubule cell
10
pancreatic stellate cell
9
HEK293
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
kidney glomerular epithelial cell
8
renal cortical epithelial cell
7
GM23248
7
chondrocyte
7
kidney epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mesangial cell
6
subcutaneous abdominal adipose tissue
5
cardiac fibroblast
5
ACHN
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Caki2
5
Connecting Tubule Cell
5
Cortical Thick Ascending Limb Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
RCC 7860
5
Renin-positive Juxtaglomerular Granular Cell
5
cardiac fibroblast
5
cartilage tissue
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
fibroblast of the conjunctiva
5
kidney capillary endothelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
renal cell carcinoma
4
G401
4
HT1080
4
adult endothelial progenitor cell
4
bone tissue
4
brain pericyte
4
cortex of kidney
4
fibroblast of gingiva
4
kidney connecting tubule epithelial cell
4
preadipocyte
4
stromal cell of bone marrow
4
visceral abdominal adipose tissue
3
HEK293T
3
S-shaped body
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
pancreatic quiescent stellate cell
3
pulmonary interstitial fibroblast
2
adipose tissue derived mesenchymal stem cell
2
articular chondrocyte
2
columnar chondrocyte
2
extracellular matrix secreting cell
2
fat cell
2
kidney epithelium
2
kidney inner medulla collecting duct intercalated cell
2
luteal cell
2
metanephros
2
renal connecting tubule
2
renal principal cell
2
stromal cell
2
ureteric bud
1
left kidney
1
omental fat pad
1
Adipose SGBS cell line (adipocyte)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Preadipose SGBS cell line (adipocyte)
1
RCC
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
SGBS preadipocytes
1
activated pancreatic stellate cell
1
adipose-derived mesenchymal stem cell
1
beige adipocyte
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
embryonic fibroblast
1
epithelial cell of distal tubule
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
glomerular epithelium
1
kidney - cortex
1
kidney - medulla
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
mesenchymal stem cell of adipose
1
nephron tubule
1
parietal epithelial cell
1
pericardium fibroblast
1
proximal tubule
1
quiescent pancreatic stellate cell
1
renal alpha-intercalated cell
renal beta-intercalated cell
1
renal cortex tubule
1
renal glomerulus
1
renal intercalated cell
1
white adipose cell
1
white adipose tissue
Disease term
3
renal cell adenocarcinoma
Organ
5
kidney
0
connective tissue
Life stage
4
adult
Date released
3
September, 2022
1
February, 2021
1
June, 2020
Software used
2
r
1
chromhmm
1
encode-ccres
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
renal beta-intercalated cell
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR486ZRU
released
Annotation file set
: Candidate regulatory elements for BSS00037 ACHN from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR995GUV
released
Annotation file set
: Target gene predictions for BSS00037 ACHN from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR869VSH
released
Annotation file set
: Chromatin states for BSS00037 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR757WVZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE ACHN
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR192STS
released
Annotation file set
: Accessible chromatin annotation for Kidney ACHN from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP