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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
DNase-seq
3
ChIP-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
65
kidney
32
right kidney
31
fibroblast
31
renal cortex interstitium
31
renal pelvis
27
left kidney
26
adipose tissue
21
adipocyte
21
epithelial cell of proximal tubule
21
pericyte cell
20
glomerular endothelial cell
20
subcutaneous adipose tissue
16
mesenchymal stem cell
16
omental fat pad
15
foreskin fibroblast
15
osteoblast
14
fibroblast of cardiac tissue
12
glomerular visceral epithelial cell
10
fibroblast of lung
10
hepatic stellate cell
10
left renal cortex interstitium
10
left renal pelvis
10
pancreatic stellate cell
10
right renal pelvis
10
skin fibroblast
9
right renal cortex interstitium
8
fibroblast of dermis
8
kidney tubule cell
7
HEK293
7
chondrocyte
7
kidney glomerular epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mesangial cell
7
renal cortical epithelial cell
6
GM23248
6
fibroblast of mammary gland
6
fibroblast of pulmonary artery
6
fibroblast of villous mesenchyme
6
kidney epithelial cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Connecting Tubule Cell
5
Cortical Thick Ascending Limb Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Renin-positive Juxtaglomerular Granular Cell
5
cartilage tissue
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
subcutaneous abdominal adipose tissue
4
ACHN
4
Caki2
4
RCC 7860
4
adult endothelial progenitor cell
4
bone tissue
4
brain pericyte
4
cardiac fibroblast
4
cortex of kidney
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
fibroblast of the conjunctiva
4
kidney capillary endothelial cell
4
kidney connecting tubule epithelial cell
4
preadipocyte
4
renal cell carcinoma
4
visceral abdominal adipose tissue
3
G401
3
HT1080
3
S-shaped body
3
fibroblast of gingiva
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
pancreatic quiescent stellate cell
3
pulmonary interstitial fibroblast
3
stromal cell of bone marrow
2
HEK293T
2
adipose tissue derived mesenchymal stem cell
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
articular chondrocyte
2
columnar chondrocyte
2
extracellular matrix secreting cell
2
fat cell
2
kidney epithelium
2
kidney inner medulla collecting duct intercalated cell
2
luteal cell
2
metanephros
2
renal connecting tubule
2
renal principal cell
2
stromal cell
2
ureteric bud
1
left kidney
1
omental fat pad
1
Adipose SGBS cell line (adipocyte)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Preadipose SGBS cell line (adipocyte)
1
RCC
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
SGBS preadipocytes
1
activated pancreatic stellate cell
1
adipose-derived mesenchymal stem cell
1
beige adipocyte
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
embryonic fibroblast
1
epithelial cell of distal tubule
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
glomerular epithelium
1
kidney - cortex
1
kidney - medulla
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
mesenchymal stem cell of adipose
1
nephron tubule
1
parietal epithelial cell
1
pericardium fibroblast
1
proximal tubule
1
quiescent pancreatic stellate cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal cortex tubule
1
renal glomerulus
1
renal intercalated cell
1
white adipose cell
1
white adipose tissue
Disease term
2
renal cell adenocarcinoma
Organ
4
kidney
0
connective tissue
Life stage
3
adult
Date released
2
September, 2022
1
February, 2021
1
June, 2020
Software used
2
r
chromhmm
1
encode-ccres
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
software_used.software.name!
chromhmm
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR486ZRU
released
Annotation file set
: Candidate regulatory elements for BSS00037 ACHN from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR995GUV
released
Annotation file set
: Target gene predictions for BSS00037 ACHN from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR757WVZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE ACHN
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR192STS
released
Annotation file set
: Accessible chromatin annotation for Kidney ACHN from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP