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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
6
chromatin state
6
target gene predictions
4
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
6
cis-regulatory elements
2
Gene expression levels
Annotation type Category
3
ATAC-seq
2
snATAC-seq
1
DNase-seq
1
RNA-seq
1
snRNA-seq
Available data
6
bed bed3+
2
bigWig
1
tsv
File set status
8
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
5
in vitro differentiated cells
3
primary cell
Biosample term
16
fibroblast
10
pericyte cell
8
adipocyte
7
mesangial cell
7
osteoblast
7
subcutaneous adipose tissue
6
pancreatic stellate cell
5
adipose tissue
5
chondrocyte
5
tibial nerve
4
bone tissue
4
fibroblast of cardiac tissue
4
hepatic stellate cell
4
mesenchymal stem cell
4
omental fat pad
3
cardiac fibroblast
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Fibroblast
3
Mesangial Cell
3
adult endothelial progenitor cell
3
skin fibroblast
2
brain pericyte
2
extracellular matrix secreting cell
2
visceral abdominal adipose tissue
1
GM23248
1
SGBS preadipocytes
1
activated pancreatic stellate cell
1
adipose-derived mesenchymal stem cell
1
cardiac atrium fibroblast
1
cardiac fibroblast
1
cardiac ventricle fibroblast
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
foreskin fibroblast
1
kidney interstitial fibroblast
1
luteal cell
1
mesenchymal stem cell of adipose
1
pericardium fibroblast
1
preadipocyte
1
pulmonary interstitial fibroblast
1
quiescent pancreatic stellate cell
1
stromal cell
Organ
8
connective tissue
0
nerve
Life stage
1
adult
Date released
3
February, 2024
1
February, 2021
1
June, 2020
1
November, 2021
1
November, 2022
1
October, 2019
Software used
6
macs
2
r
1
deeptools
1
samtools
1
umitools
Lab
5
AMP-T2D consortium
2
Stephen Parker, UMich
1
Bing Ren, UCSD
Project
7
AMP
1
ENCODE
RFA
5
AMP
2
AMP2
1
ENCODE3
Showing 8 of 8 results
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Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP