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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
41
K562
32
adipose tissue
32
fibroblast
27
adipocyte
25
tibial nerve
22
pericyte cell
21
subcutaneous adipose tissue
19
foreskin fibroblast
19
mesenchymal stem cell
18
omental fat pad
17
fibroblast of cardiac tissue
17
osteoblast
16
GM12878
16
fibroblast of lung
12
fibroblast of dermis
12
skin fibroblast
11
hepatic stellate cell
10
pancreatic stellate cell
8
GM06990
8
GM19240
8
HAP-1
8
HL-60
8
NAMALWA cell
8
OCI-LY7
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
7
CMK
7
GM12875
7
GM19238
7
GM19239
7
GM23248
7
RPMI8226
7
chondrocyte
7
mesangial cell
6
GM12891
6
GM12892
6
KBM-7
6
peripheral blood mononuclear cell
6
subcutaneous abdominal adipose tissue
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Fibroblast
5
Mesangial Cell
5
NB4
5
cardiac fibroblast
5
cartilage tissue
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
fibroblast of the conjunctiva
4
DOHH2
4
GM12873
4
GM18505
4
GM19099
4
GM19193
4
HT1080
4
SU-DHL-6
4
adult endothelial progenitor cell
4
bone tissue
4
brain pericyte
4
fibroblast of gingiva
4
preadipocyte
4
stromal cell of bone marrow
4
visceral abdominal adipose tissue
3
GM10847
3
GM12872
3
GM18526
3
GM18951
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
pancreatic quiescent stellate cell
3
peripheral blood stem cell
3
pulmonary interstitial fibroblast
2
NAMALWA
2
SUDHL6
2
adipose tissue derived mesenchymal stem cell
2
articular chondrocyte
2
blood
2
columnar chondrocyte
2
extracellular matrix secreting cell
2
fat cell
2
luteal cell
2
stromal cell
1
omental fat pad
1
Adipose SGBS cell line (adipocyte)
1
GM12874
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Karpas-422
1
Preadipose SGBS cell line (adipocyte)
1
SGBS preadipocytes
1
activated pancreatic stellate cell
1
adipose-derived mesenchymal stem cell
1
beige adipocyte
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
cerebrospinal fluid
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
embryonic fibroblast
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
kidney interstitial fibroblast
1
mesenchymal stem cell of adipose
1
pericardium fibroblast
1
quiescent pancreatic stellate cell
1
white adipose cell
1
white adipose tissue
1
whole blood
Organ
8
blood
8
bodily fluid
0
connective tissue
0
nerve
Life stage
4
adult
Date released
3
February, 2021
3
September, 2022
1
June, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
Showing 8 of 8 results
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Download
FileSet
DSR834AMF
released
Annotation file set
: Candidate regulatory elements for BSS00491 HAP-1 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR765USM
released
Annotation file set
: Target gene predictions for BSS00491 HAP-1 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR296VLY
released
Annotation file set
: Chromatin states for BSS00491 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR930MDC
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HAP-1
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR956RSG
released
Annotation file set
: Histone modifications annotation for Blood HAP1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR497ETD
released
Annotation file set
: Binding sites annotation for Blood HAP1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR155AOX
released
Annotation file set
: enhancer-gene predicton of HAP1 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR934MXE
released
Annotation file set
: Accessible chromatin annotation for Blood HAP1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP