Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
54
H1-hESC
23
trophoblast cell
16
H9
16
chorionic villus
11
trophoblast
10
endodermal cell
9
tongue
8
mesodermal cell
6
H7-hESC
6
HUES6
6
HUES8
5
CyT49
5
H4
5
HUES64
5
ectodermal cell
4
ACC112
4
ELF-1
4
HUES48
4
UCSF-4
4
embryonic facial prominence
4
fibroblast of gingiva
3
ES-I3
3
cardiac mesoderm primordium
3
hESC H9
3
primordial germ cell
2
first pancreatic bud
2
minor salivary gland
1
H1
1
H7
1
cardiogenic mesoderm
1
embryonic fibroblast
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
morula
1
placental hematopoietic stem cell
1
trophoblast giant cell
Organ
4
connective tissue
4
mouth
0
embryo
Life stage
4
unknown
Date released
3
September, 2022
1
February, 2021
Software used
2
r
1
chromhmm
1
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
organ_slims!
prostate gland
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
FileSet
DSR602POK
released
Annotation file set
: Candidate regulatory elements for BSS00338 fibroblast of gingiva from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR611XHN
released
Annotation file set
: Target gene predictions for BSS00338 fibroblast of gingiva from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR302IPT
released
Annotation file set
: Chromatin states for BSS00338 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR354XIS
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE fibroblast of gingiva
Lab:
AMP-T2D consortium
Project:
AMP