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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
16
gene expression
2
candidate regulatory elements
1
accessible chromatin
binding sites
1
chromatin state
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
DNase-seq
Available data
1
bed bed3+
1
bed bed9
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
20
pigmented layer of retina
16
endothelial cell
10
hepatocyte
10
retinal pigment epithelial cell
8
EndoC_BH1
8
pancreatic beta cell
8
pancreatic ductal cell
7
endothelial cell of umbilical vein
7
pancreatic acinar cell
7
pancreatic alpha cell
6
endothelial cell of hepatic sinusoid
5
foreskin keratinocyte
5
keratinocyte
5
mammary gland epithelial cell
5
pancreatic delta cell
4
colon epithelial cell
4
glomerular visceral epithelial cell
4
kidney tubule cell
4
type II pneumocyte
3
breast epithelium
3
bronchial epithelial cell
3
choroid plexus epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
epithelial cell of prostate
3
esophagus squamous epithelium
3
glomerular endothelial cell
3
kidney glomerular epithelial cell
3
luminal epithelial cell of mammary gland
3
renal cortical epithelial cell
3
type I pneumocyte
2
aortic endothelial cell
2
brain microvascular endothelial cell
2
capillary endothelial cell
2
club cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
endocardial cell
2
epithelial cell of proximal tubule
2
iris pigment epithelial cell
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
mammary epithelial cell
2
mesothelial cell
2
myoepithelial cell of mammary gland
2
non-pigmented ciliary epithelial cell
2
pancreatic polypeptide-secreting cell
2
pulmonary artery endothelial cell
1
basal cell of epidermis
1
cardiac endothelial cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
dermis microvascular lymphatic vessel endothelial cell
1
eccrine cell
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epidermal melanocyte
1
epithelial cell of amnion
1
epithelial cell of esophagus
1
foveolar cell of stomach
1
gastric goblet cell
1
glomerular epithelium
1
goblet cell
1
granular cell of epidermis
1
kidney distal convoluted tubule epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lung microvascular endothelial cell
1
lung neuroendocrine cell
1
myoepithelial cell
1
neuroendocrine cell
1
non keratinizing barrier epithelial cell
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic endothelial cell
1
paneth cell
1
parietal cell
1
parietal epithelial cell
1
peptic cell
1
placental villus capillary endothelial cell
1
renal cortex tubule
1
renal intercalated cell
1
renal principal cell
1
respiratory goblet cell
1
small intestine goblet cell
1
stomach neuroendocrine cell
1
thyroid follicular cell
1
tracheal epithelial cell
1
type B pancreatic cell
1
type I cell of adrenal cortex
1
type II cell of adrenal cortex
1
ureteric bud
1
urothelial cell
Organ
2
epithelium
2
kidney
Life stage
1
unknown
Date released
1
January, 2020
1
September, 2022
Software used
1
chromhmm
1
macs
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
annotation_type!
binding sites
Showing 2 of 2 results
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Download
FileSet
DSR129CVZ
released
Annotation file set
: Chromatin states for BSS00310 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR184YBQ
released
Annotation file set
: Accessible chromatin annotation of kidney epithelial cell of proximal tubule from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP