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Schema
Citing CMDGA
Clear Filters
Annotation type
candidate regulatory elements
3
target gene predictions
2
chromatin state
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
6
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
6
bed bed3+
2
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
5
primary cell
3
cell line
Biosample term
41
endothelial cell
34
hepatocyte
25
pancreatic ductal cell
21
EndoC_BH1
21
epithelial cell of proximal tubule
20
pigmented layer of retina
19
glomerular endothelial cell
18
keratinocyte
18
pancreatic acinar cell
18
pancreatic beta cell
17
pancreatic alpha cell
16
endothelial cell of hepatic sinusoid
16
pancreatic delta cell
14
endothelial cell of umbilical vein
14
retinal pigment epithelial cell
13
mammary gland epithelial cell
11
foreskin keratinocyte
11
glomerular visceral epithelial cell
8
bronchial epithelial cell
8
choroid plexus epithelial cell
8
colon epithelial cell
8
epithelial cell of prostate
7
kidney loop of Henle thin ascending limb epithelial cell
7
kidney tubule cell
7
mammary epithelial cell
7
type II pneumocyte
6
breast epithelium
6
cortical cell of adrenal gland
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
kidney glomerular epithelial cell
6
luminal epithelial cell of mammary gland
6
pancreatic polypeptide-secreting cell
6
renal cortical epithelial cell
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Connecting Tubule Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
Medullary Thick Ascending Limb Cell
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Transitional Principal-Intercalated Cell
5
esophagus squamous epithelium
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
pancreatic endothelial cell
5
pulmonary artery endothelial cell
5
tracheal epithelial cell
4
aortic endothelial cell
4
dermis blood vessel endothelial cell
4
endothelial cell of lymphatic vessel
4
epithelial cell of esophagus
4
kidney capillary endothelial cell
4
kidney connecting tubule epithelial cell
4
mesothelial cell
4
myoepithelial cell of mammary gland
4
pancreatic A cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
type B pancreatic cell
4
type I pneumocyte
3
S-shaped body
3
brain microvascular endothelial cell
3
club cell
3
endocardial cell
3
goblet cell
3
hepatocyte(AFP)
3
iris pigment epithelial cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
meso-epithelial cell
3
non-pigmented ciliary epithelial cell
3
parietal cell
3
peptic cell
3
thyroid follicular cell
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
cholangiocyte
2
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
2
endothelial cell of coronary artery
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epidermal melanocyte
2
epithelial cell of amnion
2
foveolar cell of stomach
2
granular cell of epidermis
2
kidney epithelium
2
kidney inner medulla collecting duct intercalated cell
2
lung microvascular endothelial cell
2
myoepithelial cell
2
non keratinizing barrier epithelial cell
2
paneth cell
2
renal connecting tubule
2
renal principal cell
2
renal vesicle
2
respiratory goblet cell
2
small intestine goblet cell
2
stomach neuroendocrine cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
2
ureteric bud
2
vein endothelial cell
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
Liver fetal (hepatocyte)
1
breast - mammary tissue
1
bronchial goblet cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
corneal epithelium
1
enteroendocrine cell
1
epithelial cell of distal tubule
1
esophagus - mucosa
1
gastric goblet cell
1
glomerular epithelium
1
granulosa cell
1
intermediate endothelial cell
1
intestinal epithelial cell
1
intestinal epithelium
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
nephron tubule
1
neuroendocrine cell
1
pancreatic D cell
1
pancreatic PP cell
1
parietal epithelial cell
1
placental villus capillary endothelial cell
1
proximal tubule
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal cortex tubule
1
renal glomerulus
1
renal intercalated cell
1
urothelial cell
Organ
8
epithelium
8
prostate gland
Life stage
4
unknown
Date released
4
September, 2022
2
February, 2021
1
June, 2020
1
May, 2021
Software used
3
macs
2
chromhmm
2
r
1
abc
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_type!
candidate regulatory elements
Showing 8 of 8 results
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Download
FileSet
DSR120KRM
released
Annotation file set
: Target gene predictions for BSS00309 epithelial cell of prostate from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR498KQI
released
Annotation file set
: Target gene predictions for BSS00308 epithelial cell of prostate from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR275EDQ
released
Annotation file set
: Chromatin states for BSS00309 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR660GSF
released
Annotation file set
: Chromatin states for BSS00308 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR783HIA
released
Annotation file set
: Histone modifications annotation for Prostate PrEC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR324LJC
released
Annotation file set
: Binding sites annotation for Prostate PrEC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR327KAR
released
Annotation file set
: enhancer-gene predicton of epithelial_cell_of_prostate-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR008LFO
released
Annotation file set
: Accessible chromatin annotation for Prostate PrEC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP