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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
target gene predictions
3
accessible chromatin
1
candidate regulatory elements
1
chromatin state
Annotation Category
5
cis-regulatory elements
Annotation type Category
3
snATAC-seq
2
ChIP-seq
1
DNase-seq
Available data
4
bed bed3+
3
bigWig
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
4
GRCh38
Organism
5
Homo sapiens
Biosample type
3
primary cell
2
cell line
Biosample term
34
endothelial cell
33
hepatocyte
22
epithelial cell of proximal tubule
22
pancreatic ductal cell
20
EndoC_BH1
20
glomerular endothelial cell
20
pigmented layer of retina
18
foreskin keratinocyte
16
endothelial cell of hepatic sinusoid
16
endothelial cell of umbilical vein
16
keratinocyte
15
pancreatic acinar cell
15
pancreatic beta cell
15
retinal pigment epithelial cell
14
pancreatic alpha cell
12
glomerular visceral epithelial cell
12
mammary gland epithelial cell
12
pancreatic delta cell
10
bronchial epithelial cell
9
choroid plexus epithelial cell
9
epithelial cell of prostate
9
esophagus squamous epithelium
9
mammary epithelial cell
8
breast epithelium
8
dermis blood vessel endothelial cell
8
kidney tubule cell
7
kidney glomerular epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
renal cortical epithelial cell
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
kidney epithelial cell
6
myoepithelial cell of mammary gland
6
pulmonary artery endothelial cell
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Connecting Tubule Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
Medullary Thick Ascending Limb Cell
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Transitional Principal-Intercalated Cell
5
colon epithelial cell
5
epithelial cell of esophagus
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
pancreatic endothelial cell
5
pancreatic polypeptide-secreting cell
5
tracheal epithelial cell
5
type II pneumocyte
4
aortic endothelial cell
4
brain microvascular endothelial cell
4
cortical cell of adrenal gland
4
dermis microvascular lymphatic vessel endothelial cell
4
iris pigment epithelial cell
4
kidney capillary endothelial cell
4
kidney connecting tubule epithelial cell
4
luminal epithelial cell of mammary gland
4
lung microvascular endothelial cell
4
non-pigmented ciliary epithelial cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
3
S-shaped body
3
endothelial cell of lymphatic vessel
3
goblet cell
3
hepatocyte(AFP)
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
meso-epithelial cell
3
mesothelial cell
3
type I pneumocyte
2
capillary endothelial cell
2
cholangiocyte
2
club cell
2
endocardial cell
2
endothelial cell of coronary artery
2
epidermal melanocyte
2
epithelial cell of amnion
2
kidney epithelium
2
kidney inner medulla collecting duct intercalated cell
2
parietal cell
2
peptic cell
2
renal connecting tubule
2
renal principal cell
2
renal vesicle
2
thyroid follicular cell
2
ureteric bud
2
vein endothelial cell
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
Liver fetal (hepatocyte)
1
amniotic epithelial cell
1
basal cell of epidermis
1
breast - mammary tissue
1
bronchial goblet cell
1
cardiac endothelial cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
corneal epithelium
1
eccrine cell
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epithelial cell of distal tubule
1
esophagus - mucosa
1
foveolar cell of stomach
1
gastric goblet cell
1
glomerular epithelium
1
granular cell of epidermis
1
granulosa cell
1
intermediate endothelial cell
1
intestinal epithelial cell
1
intestinal epithelium
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
myoepithelial cell
1
nephron tubule
1
neuroendocrine cell
1
non keratinizing barrier epithelial cell
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
paneth cell
1
parietal epithelial cell
1
placental villus capillary endothelial cell
1
proximal tubule
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal cortex tubule
1
renal glomerulus
1
renal intercalated cell
1
respiratory goblet cell
1
small intestine goblet cell
1
stomach neuroendocrine cell
1
type B pancreatic cell
1
type I cell of adrenal cortex
1
type II cell of adrenal cortex
1
urothelial cell
Organ
5
epithelium
5
intestine
5
large intestine
Life stage
2
unknown
Date released
3
November, 2021
2
September, 2022
Software used
3
macs
1
chromhmm
1
r
Lab
3
Bing Ren, UCSD
2
AMP-T2D consortium
Project
3
ENCODE
2
AMP
RFA
3
ENCODE3
2
AMP
annotation_type!
target gene predictions
Showing 5 of 5 results
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Download
FileSet
DSR635VAQ
released
Annotation file set
: Candidate regulatory elements for BSS00223 colon epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR024YCW
released
Annotation file set
: Chromatin states for BSS00223 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR609IPL
released
Annotation file set
: Accessible chromatin annotation of Colon Epithelial Cell 3 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR419PGV
released
Annotation file set
: Accessible chromatin annotation of Colon Epithelial Cell 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR903BJH
released
Annotation file set
: Accessible chromatin annotation of Colon Epithelial Cell 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE