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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
candidate regulatory elements
1
accessible chromatin
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
5
DNase-seq
3
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
41
endothelial cell
31
hepatocyte
25
pancreatic ductal cell
21
EndoC_BH1
20
epithelial cell of proximal tubule
20
pigmented layer of retina
18
glomerular endothelial cell
18
pancreatic acinar cell
17
pancreatic beta cell
16
endothelial cell of hepatic sinusoid
16
pancreatic alpha cell
15
keratinocyte
14
endothelial cell of umbilical vein
14
pancreatic delta cell
13
retinal pigment epithelial cell
10
foreskin keratinocyte
10
glomerular visceral epithelial cell
10
mammary epithelial cell
7
choroid plexus epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mammary gland epithelial cell
7
type II pneumocyte
6
bronchial epithelial cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
epithelial cell of prostate
6
pancreatic polypeptide-secreting cell
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Connecting Tubule Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
Medullary Thick Ascending Limb Cell
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Transitional Principal-Intercalated Cell
5
breast epithelium
5
esophagus squamous epithelium
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney glomerular epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
pancreatic endothelial cell
5
renal cortical epithelial cell
5
tracheal epithelial cell
4
dermis blood vessel endothelial cell
4
dermis microvascular lymphatic vessel endothelial cell
4
endothelial cell of lymphatic vessel
4
kidney connecting tubule epithelial cell
4
kidney epithelial cell
4
kidney tubule cell
4
luminal epithelial cell of mammary gland
4
mesothelial cell
4
pancreatic A cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pulmonary artery endothelial cell
4
type B pancreatic cell
4
type I pneumocyte
3
S-shaped body
3
club cell
3
endocardial cell
3
epithelial cell of esophagus
3
goblet cell
3
hepatocyte(AFP)
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
meso-epithelial cell
3
parietal cell
3
peptic cell
3
thyroid follicular cell
2
basal cell of epidermis
2
brain microvascular endothelial cell
2
capillary endothelial cell
2
cardiac endothelial cell
2
cholangiocyte
2
dermis lymphatic vessel endothelial cell
2
eccrine cell
2
endothelial cell of coronary artery
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
foveolar cell of stomach
2
granular cell of epidermis
2
iris pigment epithelial cell
2
kidney capillary endothelial cell
2
kidney epithelium
2
kidney inner medulla collecting duct intercalated cell
2
lung microvascular endothelial cell
2
myoepithelial cell
2
myoepithelial cell of mammary gland
2
non keratinizing barrier epithelial cell
2
non-pigmented ciliary epithelial cell
2
paneth cell
2
renal connecting tubule
2
renal principal cell
2
renal vesicle
2
respiratory goblet cell
2
small intestine goblet cell
2
stomach neuroendocrine cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
2
ureteric bud
2
vein endothelial cell
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
Liver fetal (hepatocyte)
1
amniotic epithelial cell
1
aortic endothelial cell
1
breast - mammary tissue
1
bronchial goblet cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
corneal epithelium
1
enteroendocrine cell
1
epithelial cell of distal tubule
1
esophagus - mucosa
1
gastric goblet cell
1
glomerular epithelium
1
granulosa cell
1
intermediate endothelial cell
1
intestinal epithelial cell
1
intestinal epithelium
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
nephron tubule
1
neuroendocrine cell
1
pancreatic D cell
1
pancreatic PP cell
1
parietal epithelial cell
1
placental villus capillary endothelial cell
1
proximal tubule
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal cortex tubule
1
renal glomerulus
1
renal intercalated cell
1
urothelial cell
Organ
5
breast
5
epithelium
Life stage
3
adult
Date released
September, 2022
3
February, 2021
1
June, 2020
1
May, 2021
Software used
3
encode-ccres
1
abc
1
macs
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
month_released!
September, 2022
Showing 5 of 5 results
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Download
FileSet
DSR751KRC
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE breast epithelium
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR027WWM
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE breast epithelium
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR278EXR
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE breast epithelium
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR097EPN
released
Annotation file set
: enhancer-gene predicton of breast_epithelium-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR042SCF
released
Annotation file set
: Accessible chromatin annotation for Breast Breast epithelium from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP