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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
5
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
snATAC-seq
Available data
5
bed bed3+
2
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
3
cell line
2
primary cell
Biosample term
20
pigmented layer of retina
19
endothelial cell
13
hepatocyte
12
endothelial cell of hepatic sinusoid
12
pancreatic ductal cell
11
retinal pigment epithelial cell
9
keratinocyte
8
EndoC_BH1
8
pancreatic acinar cell
8
pancreatic beta cell
7
pancreatic alpha cell
5
mammary gland epithelial cell
5
pancreatic delta cell
5
tracheal epithelial cell
4
aortic endothelial cell
4
bronchial epithelial cell
4
choroid plexus epithelial cell
4
mammary epithelial cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
enterocyte
3
epithelial cell of prostate
3
foreskin keratinocyte
3
glomerular visceral epithelial cell
3
pulmonary artery endothelial cell
3
type II pneumocyte
2
dermis lymphatic vessel endothelial cell
2
dermis microvascular lymphatic vessel endothelial cell
2
endocardial cell
2
endothelial cell of lymphatic vessel
2
endothelial cell of umbilical vein
2
glomerular endothelial cell
2
kidney epithelium
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
luminal epithelial cell of mammary gland
2
meso-epithelial cell
2
mesothelial cell
2
pancreatic polypeptide-secreting cell
2
renal cortical epithelial cell
2
type I pneumocyte
2
vein endothelial cell
1
basal cell of epidermis
1
brain microvascular endothelial cell
1
breast epithelium
1
cardiac endothelial cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
club cell
1
corneal epithelium
1
eccrine cell
1
endothelial cell of coronary artery
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epithelial cell of proximal tubule
1
esophagus squamous epithelium
1
foveolar cell of stomach
1
gastric goblet cell
1
glomerular epithelium
1
goblet cell
1
granular cell of epidermis
1
intestinal epithelial cell
1
intestinal epithelium
1
iris pigment epithelial cell
1
kidney capillary endothelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lung neuroendocrine cell
1
myoepithelial cell
1
non keratinizing barrier epithelial cell
1
non-pigmented ciliary epithelial cell
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic endothelial cell
1
paneth cell
1
parietal cell
1
parietal epithelial cell
1
peptic cell
1
placental villus capillary endothelial cell
1
renal connecting tubule
1
renal cortex tubule
1
renal intercalated cell
1
renal principal cell
1
respiratory goblet cell
1
small intestine goblet cell
1
stomach neuroendocrine cell
1
thyroid follicular cell
1
type B pancreatic cell
1
type I cell of adrenal cortex
1
type II cell of adrenal cortex
1
ureteric bud
1
urothelial cell
Organ
5
epithelium
4
brain
4
vasculature
1
intestine
1
small intestine
Date released
2
February, 2021
1
January, 2020
1
June, 2020
1
November, 2021
Software used
5
macs
2
chromhmm
2
r
1
abc
1
deltasvm
1
encode-ccres
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
Project
4
AMP
1
ENCODE
RFA
4
AMP
1
ENCODE3
Showing 5 of 5 results
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Download
FileSet
DSR459YTN
released
Annotation file set
: Accessible chromatin annotation of Small Intestinal Goblet Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR023RXU
released
Annotation file set
: Histone modifications annotation for Neural HCPEpiC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR038LCX
released
Annotation file set
: Binding sites annotation for Neural HCPEpiC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR237IBX
released
Annotation file set
: Accessible chromatin annotation for Neural HCPEpiC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR536GJU
released
Annotation file set
: Accessible chromatin annotation of brain choroid plexus cell from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP