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Schema
Citing CMDGA
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Annotation type
1
chromatin state
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
ChIP-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
30
endothelial cell
16
endothelial cell of hepatic sinusoid
14
hepatocyte
14
pancreatic acinar cell
14
pancreatic ductal cell
13
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic delta cell
7
keratinocyte
7
type II pneumocyte
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Connecting Tubule Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
Medullary Thick Ascending Limb Cell
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Transitional Principal-Intercalated Cell
5
pancreatic endothelial cell
4
endothelial cell of lymphatic vessel
4
luminal epithelial cell of mammary gland
4
mesothelial cell
4
pancreatic A cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic polypeptide-secreting cell
4
type B pancreatic cell
4
type I pneumocyte
3
club cell
3
endocardial cell
3
goblet cell
3
mammary gland epithelial cell
3
parietal cell
3
peptic cell
3
thyroid follicular cell
2
EndoC_BH1
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
eccrine cell
2
endothelial cell of umbilical vein
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of esophagus
2
foveolar cell of stomach
2
granular cell of epidermis
2
kidney distal convoluted tubule epithelial cell
2
mammary epithelial cell
2
myoepithelial cell
2
non keratinizing barrier epithelial cell
2
paneth cell
2
renal principal cell
2
respiratory goblet cell
2
small intestine goblet cell
2
stomach neuroendocrine cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
1
breast epithelium
1
bronchial goblet cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
enteroendocrine cell
1
epithelial cell of prostate
1
epithelial cell of proximal tubule
1
gastric goblet cell
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
granulosa cell
1
kidney connecting tubule epithelial cell
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
neuroendocrine cell
1
pancreatic D cell
1
pancreatic PP cell
1
parietal epithelial cell
1
placental villus capillary endothelial cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal intercalated cell
1
retinal pigment epithelial cell
1
ureteric bud
Organ
2
blood vessel
2
epithelium
2
vasculature
2
vein
Date released
1
August, 2017
1
May, 2021
Software used
1
abc
1
chromhmm
Lab
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
2
AMP
RFA
2
AMP
lab.title!
AMP-T2D consortium
Showing 2 of 2 results
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Download
FileSet
DSR784TGC
released
Annotation file set
: enhancer-gene predicton of endothelial_cell_of_umbilical_vein-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
TSTSR000759
released
Annotation file set
: ChromHMM 13-state model for endothelial cell of umbilical vein
Lab:
Stephen Parker, UMich
Project:
AMP